Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva05g01461 ATGGCATTTCTTCCCCAACCGGTTCAAGAAGCTGAAGAAGACACCAACATCGATGTGCACAACAGTCACGGGACTCCCATTCGGTATGTTCCTCTCGATCATCTTTATTCTGCGACTTCGCCTTGTCGGGTTAACCCGAGTGTTTCTGCTAACGTGATGTCGAAGAAGGTGAAAGCCCGTAAACTTAATCTTAGCCATTTGGAGGAGGATGGTGATCAGAAAAAGCCGCAGGAGAAGCCGCCACTTGTTCATGTCTACTCTCGGCGCCGAACGCGGCCACGGCATTGTTCACAAAGCTTGCCGTTTTATGATTCCTTGGTGGGTCGGACTGAGTCCACCTCCgaaaattgtgaaattgatGAGTCCGGGAAGGACCAGGAAAATGACAATTCTGACGTGGAGGGGGGTTTGGTGAAGAAGAGGAAAGGTGACGATGATGATACTTCGTTGCTGAAATTGGGGGAACATTCTAGCCCACTCGAGAGTCTTGAACGGCCTCGGTTTAGGAATTGTCGTAATTTCAGTGTTTTTAGTTGCCGCACTAATCGGATACAGCAGGGCACTTCAGAAAATTGTCAAAAGATGTTGCCTGCTTCTCACTCCGTGAAGCGATGGGTCAGGTTGAGTATTGATAATGTCGATCCCCAAACATTTGTTGGGTTACAGTGCCAGGTTTATTGGCCACTGGATCTTGATTGGTACTCTGGGTGTGTTGAAGGTTATGATTCAGAAACTAAGCTGCACCACGTTAAGTATAAAGATGGTGATGAAGAAGATTTAAATCTTTCAcgtgagaaaataaaattccatgTTTCCCGTGAGGATATGCAGCGCTTAAATTTGAGGTATGGGCCCAAAGGTTCAGACAGTGACATCTCTGCCTACAATGAGATGCTTGTTCTGGCTGCAAGTTTAGATGATTATCAAGAGATTGAACCAGGGGATCTCATATGGGCCAAGCTCACAGGTCATGCAATGTGGCCAGCTGTTGTCATGGATGAATCTAACTGTCAGGGATTAAAAATGTTTCCTGGAGGAAGTTTGGTCCCTGTACAGTTTTTTGGCAGCCATGACTTTGCAAGGGTTAAAGTGCGGCATGCTATCCCATTTGTCAAAGGCCTTCTTGCTTCTTTTCACTTGAAGTGCAAGAAACCTCGTTTTACTGACAGTTTAGAAGAGGCAAAAAAgtaTTTAAGTGATCGGAAGCTTCCTTCAAACATGCTACGCATGCGTAAAGGATTTAAGGCTGGTGACTGTAAAACTGCAAGTGAAGATGATTATGGATATACAGATTCAGGTGAAGACTGTTTAGATGGCAAAGGGGCTGAGGTGGCACTGGGAAACATTGAAACTTCTCCTTATGTAATAGGAGACTTGAAAATTCTAAGTCTTGGTAAGATTGTTGAGGATTCTAGATATTTCCGGGATGACAGATATGTCTGGCCAGAAGGGTATACAGCAGTGAGGAAGTTCACTTCAATTACTGACCCAACTGTATGTAGCTCATATAAGATGGAGGTGCTGAGAGATGCGGAATGCAAGATTCGGCCGCTATTTAGAGTGATCTCACTGGATAATGGAGAGCAGATCAGTGGTTCTACACCATCTGCTTGCTGGAATAAAGTGTacaaaaggataaaaagaaTGGAAAGAGGTGTTTCTGAAGGTTCTGTTGCAGGTGGGGTAGAAATGGTCTATAAATCTGGATCTGACATGTTTGGGTTCACCAATCCTGTAGTAGATAAACTTATACGGAGTTTACCTAACTTTCTCAAGTTAGGGTCTGGATATAGGACGGTTCGTGTTGATTGGTATGACCTTGATAAGTGCAATGTGTGTCACATGGATGAGGAGTACGAGAACAATCTGTTTCTGCAGTGTGACAAATGCAGAATAATGGTCCATGCAAAATGTTATGGAGAACAGAAACCAGTTAATGGTGTGCTATGGCTATGCAACCTATGTCGCCCTGGTGCTCCAGAAGCTAACACACCTTGCTGCTTGTGTCCACTCCTAGgaGGTGCAATGAAGCCTACAACCGATGGTCGATGGGCTCATTTGGCATGTGCCATGTGGATTCCTGAAACTTGCTTGGCTGATGTCAAGAGAATGGAGCCTATTGATGGGATAGATAGAATCAATAAGGATCGGTGGAAGTTGATATGTAGCATATGTCGTGTGCATTATGGTGCTTGCATTCAGTGCTCAAACAATTCTTGTCGAGTAGCATATCATCCACTTTGTGCACGTGCAGCTGGTCTCTGCGTTGAGCTAGAGGATGAGGATCGGCTCTATGTACTCTCTctggatgaagatgaagatcaGTGTATTCGCTTACTTTCTTTCTGTTGGAGACATAGACAGCCTAATGGACATTCAGTTGGTGATGAACGTATTAGGCGGGTTGGTGGTCAATGTTCTGACCATAAACCACCATCCAACCCCTCTGGTTGTGCTCGCAGTGAACCATACAATTACTTTGGCAGGAGAGGGCGAAAAGAACCCGAAGCACTTGCTGCTGCATCCTTGAAGCGCTTGTTTGTAGAGAACCAACCTTACTTAGTAGGTGGACACTGTCAGCATGGATTGTCAAACAACCTGGAGCCTTCTGGCAGAGGAGTTTGTCCTAAATTCTTTTGTAGCCAAAATAGGCTTAGAACCTCTTTGGTTGATGCTTCTAACAACATACTTTCTACCGCTGAGAAATACAAGTACATGAAGGAAACCTTTCGGAAACATTTAGCATTTGGGAAATCAAGAATTCATGGATTTGGCATCTTTGCAAAGCATCCATTTAAAGGTGGAGAtatggTGATTGAATACACTGGCGAGCTTGTTAGACCTTCTATAGCTGACCGAAGAGAGCATTTTATATACAATTCATTGGTGGGTGCTGGGACATACATGTTCCGAATTGATGATGAACGAGTCATTGATGCTACAAGAGCAGGAAGCATTgctcatttaataaatcattctTGTGAACCAAATTGTTATTCAAGAGTAATAAGTGTTAATGGTGATGagcatataataatatttgcgAGGAGGGACATCAAACAATGGGAAGAGCTTACTTATGATTACAGGTTTTTCTCAATTGACGAACAGCTGGCTTGTTATTGTGGTTTCCCAAGATGCCGGGGTATAGTAAATGATACTGAGGCAGAAGAGAGAGCTTCTAAGTTATATGTACCTCGAAGTGAATTAATAGATTGGAGAGGAGAATG 3230 0.4241 MAFLPQPVQEAEEDTNIDVHNSHGTPIRYVPLDHLYSATSPCRVNPSVSANVMSKKVKARKLNLSHLEEDGDQKKPQEKPPLVHVYSRRRTRPRHCSQSLPFYDSLVGRTESTSENCEIDESGKDQENDNSDVEGGLVKKRKGDDDDTSLLKLGEHSSPLESLERPRFRNCRNFSVFSCRTNRIQQGTSENCQKMLPASHSVKRWVRLSIDNVDPQTFVGLQCQVYWPLDLDWYSGCVEGYDSETKLHHVKYKDGDEEDLNLSREKIKFHVSREDMQRLNLRYGPKGSDSDISAYNEMLVLAASLDDYQEIEPGDLIWAKLTGHAMWPAVVMDESNCQGLKMFPGGSLVPVQFFGSHDFARVKVRHAIPFVKGLLASFHLKCKKPRFTDSLEEAKKYLSDRKLPSNMLRMRKGFKAGDCKTASEDDYGYTDSGEDCLDGKGAEVALGNIETSPYVIGDLKILSLGKIVEDSRYFRDDRYVWPEGYTAVRKFTSITDPTVCSSYKMEVLRDAECKIRPLFRVISLDNGEQISGSTPSACWNKVYKRIKRMERGVSEGSVAGGVEMVYKSGSDMFGFTNPVVDKLIRSLPNFLKLGSGYRTVRVDWYDLDKCNVCHMDEEYENNLFLQCDKCRIMVHAKCYGEQKPVNGVLWLCNLCRPGAPEANTPCCLCPLLGGAMKPTTDGRWAHLACAMWIPETCLADVKRMEPIDGIDRINKDRWKLICSICRVHYGACIQCSNNSCRVAYHPLCARAAGLCVELEDEDRLYVLSLDEDEDQCIRLLSFCWRHRQPNGHSVGDERIRRVGGQCSDHKPPSNPSGCARSEPYNYFGRRGRKEPEALAAASLKRLFVENQPYLVGGHCQHGLSNNLEPSGRGVCPKFFCSQNRLRTSLVDASNNILSTAEKYKYMKETFRKHLAFGKSRIHGFGIFAKHPFKGGDMVIEYTGELVRPSIADRREHFIYNSLVGAGTYMFRIDDERVIDATRAGSIAHLINHSCEPNCYSRVISVNGDEHIIIFARRDIKQWEELTYDYRFFSIDEQLACYCGFPRCRGIVNDTEAEERASKLYVPRSELIDWRGE 1076
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva05g01461 1076 SMART set_7 912 1036 IPR001214 GO:0005515
Bva05g01461 1076 Pfam F/Y-rich N-terminus 457 507 IPR003888 GO:0005634
Bva05g01461 1076 ProSiteProfiles PWWP domain profile. 313 373 IPR000313 -
Bva05g01461 1076 Gene3D - 300 406 - -
Bva05g01461 1076 ProSiteProfiles FYR domain FYRC motif profile. 514 601 IPR003889 GO:0005634
Bva05g01461 1076 SMART PWWP_4 311 371 IPR000313 -
Bva05g01461 1076 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 601 659 IPR013083 -
Bva05g01461 1076 Pfam PHD-zinc-finger like domain 665 776 - -
Bva05g01461 1076 MobiDBLite consensus disorder prediction 65 90 - -
Bva05g01461 1076 MobiDBLite consensus disorder prediction 65 85 - -
Bva05g01461 1076 MobiDBLite consensus disorder prediction 113 153 - -
Bva05g01461 1076 CDD SET_SETD1-like 900 1048 - -
Bva05g01461 1076 SUPERFAMILY FYVE/PHD zinc finger 602 673 IPR011011 -
Bva05g01461 1076 ProSiteProfiles Extended PHD (ePHD) domain profile. 663 787 IPR034732 -
Bva05g01461 1076 PANTHER PHD FINGER PROTEINS 9 1073 - -
Bva05g01461 1076 SMART PHD_3 721 787 IPR001965 -
Bva05g01461 1076 SMART PHD_3 609 656 IPR001965 -
Bva05g01461 1076 Gene3D SET domain 857 1065 IPR046341 -
Bva05g01461 1076 Gene3D - 452 592 - -
Bva05g01461 1076 MobiDBLite consensus disorder prediction 1 22 - -
Bva05g01461 1076 SMART fyrn_3 466 510 IPR003888 GO:0005634
Bva05g01461 1076 CDD TUDOR 220 264 IPR002999 -
Bva05g01461 1076 MobiDBLite consensus disorder prediction 114 153 - -
Bva05g01461 1076 Gene3D - 216 271 - -
Bva05g01461 1076 Pfam SET domain 923 1029 IPR001214 GO:0005515
Bva05g01461 1076 ProSitePatterns Zinc finger PHD-type signature. 610 655 IPR019786 -
Bva05g01461 1076 ProSiteProfiles FYR domain FYRN motif profile. 451 510 IPR003888 GO:0005634
Bva05g01461 1076 SMART TUDOR_7 215 273 IPR002999 -
Bva05g01461 1076 ProSiteProfiles Zinc finger PHD-type profile. 607 658 IPR019787 -
Bva05g01461 1076 Pfam PWWP domain 314 398 IPR000313 -
Bva05g01461 1076 SMART fyrc_3 518 611 IPR003889 GO:0005634
Bva05g01461 1076 CDD ePHD_ATX1_2_like 666 786 IPR041956 -
Bva05g01461 1076 ProSiteProfiles SET domain profile. 912 1030 IPR001214 GO:0005515
Bva05g01461 1076 Pfam PHD-finger 622 656 - -
Bva05g01461 1076 Pfam F/Y rich C-terminus 516 592 IPR003889 GO:0005634
Bva05g01461 1076 ProSiteProfiles Post-SET domain profile. 1036 1052 IPR003616 -
Bva05g01461 1076 SUPERFAMILY SET domain 907 1049 IPR046341 -
Bva05g01461 1076 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE ATX2 9 1073 - -
Bva05g01461 1076 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 660 789 IPR013083 -
Bva05g01461 1076 SUPERFAMILY Tudor/PWWP/MBT 308 404 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva05g01461 Bva-Chr5 8367932 8381827 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva05g01461 610 757 C2H2 Transcription Factor Family AT3G14740 40.397 3.34e-27 112
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Bva05g01461 zf-HC5HC2H_2 9.6e-33 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva05g01461 - - gmx:100808923 1507.27