Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva05g01448 ATGAgtgtcaaacaaaaaaagTTTTGGTTTCACGATTCACTGATACTAGAACAATGCTTCATCAATGGTGATCCTCAGTTGGATAATCTTATatgttttctctattttgaaTTGCAAGCCAAAAGTTGGGAAATTCTGCGCTCCGATCAGCTATTCTGTTTGGGTGGAGAAATGGCACAGAGTAATTGGGAAGCAGATAAGATGCTTgatgtttatatttatgactatttgattaagaaaaaattacataacacAGCCAAGTCATTCATGACAGAAGGAAAGGTTGCTCCTGATCCAGTAGCAATTGATGCTCCTGGAGGGTTTCTTTTTGAGTGGTGGTCTGTCTTTTGGGACATTTTTATTGCACGGACAAATGAAAAACATTCTGAGGCTGCAACAGCATATTTAGAGGCTCAGCAGACTAAAGTGAAAGAACAGCAGATGCAATTGCAGCAGTTACAACTAATGCGTCAAGCTCAGATGCAAAGAAGGGATCCTAATCATCCTCCCCTTGGTGGTCCTGTAAATGCTATCTCCACAGAAGGAATGCTTGGGCAATCCACTGCTAGTGCATTGGCTGCAAAAATGTACGAGGACCGGATGAAGCACTCTAATGCAATGGATACTGAGACATCCCAACCTCTACTAGATGCTAGAATGGCTCTTTTGAAATCCACAACAAATCCTCCGGGCAGTCAGATGGTTCAAGGAAATGCAGGAAGCGTGACAGCAGCATTGCAGCAAATTCAGGCTCGAACTCAACAGACCCCTCAAGATATCAAGGGTGATGTCAACATTGGCACCATGCAGAGATCAATGGATCCTTCTTCAATTTATGGGCAGGGAGCAATGCAGTCAAAACCTGGAATAGTAAATGCAGGATTAAATCCAGGAGTTGGTGGTCTCACATTGAAAGGATGGCCTTTAACTGGTATTGATCAAGTTCGACCCGGTTTAGGACCACAAGTTCAAAAGCCTCTCCTTCAGGGAGCTAATCAGTTTCAGCTTTTGCCacatcaacatcaacaacAACTTTTGGCACAGGTGCAGGCACAAGGAAATATTGGCAATTCTTCTATGTATGGTGATATGGATCCTCAGCGATTAAGGGGATTAGCTAGGGGCAGTTTGAATGTGAAAGATGGCCAGCCAATCGCAAATGATGGATCAATAGGTTCTCCAATGCAATCCACTTCATCTAAGATCAACATGCCACAGATCCAACAATCTAACTTGCAGCAGCAGGATCCCTTGCACCCCCAGCAATTGCAACAGaataatcGAAAAAGGAAAGGGCCTACATCTTCAGGACCTGCTAACAGCACTGGTACAGGAAACACTCTTGGCCCTTCTAATTCTCAGCCATCAACACCATCTACTCATACTCCTGGGGATGGAGTCACTATGGCGGGTAACTTGCAGAATGTAGGTGGTGTCTCTAAAGATGTGATGTTGTATGGCTCTGATGGGGCAGGTGGTCTTGCATCATCCACAAATCAGCTGTTGCAGGATGACATGGAACATTTTGCAGATGTTGGATCTTTAGATGATAATGTGGAATCATTTCTCTCACACGATGATGGTGATGGAAGAGACTTGTTTGGCACGCTGAAACGGAACCCTTCTGAACAAGCTACAGATGCTTCAAAAGGTTTTTCCTTCAGTGAAGTTGGTTCCATACGCAAAAGCAATAGCAAAGTTGTTTGCtgtcatttttcttctgatgGAAAGTTATTGGCCAGTGCAGGACATGACAAGAAGGTTGTTTTGTGGAACATGGACACATTGCAAACAGATAGCACTTCAGAGGAGCACACTCTTATCATTACCGATGTTCGCTTCAGACCAAATTCAACTCAGCTGGCAACATCTTCATTTGATACAACCGTGCGGCTTTGGGATGCTGCAGAtCCAAACTTATGTTCACAGTCGATATATACTGGTCACACCTCACATGTGATGTCCCTTGATTTCAACcctaagaaaaatgatgttttcTGTTCTTGCGATGCTAATAATGAGATTCGCTTCTGGAATATTAGTCAATATTCCTCCACTCGTGTTTTAAAGGGAGGCTCCGCACAGGTGAGGTTTCAACCAAGGTTAGGACGCCTTCTGGCTGCAGCATCTGAGAATGTCGTGTCCCTCTTTGATGTTGAGGCTGACACGCTGGTGCGCACATTGCAGGGGCACTCTACTGATGTACACTCTGTTTGCTGGGATACAAACGGAGATTACTTGGCAACTGTGAGTCAAGAGTCTGTCAGAGTATGGTCTCTTACCTCTGGGGAGTGTATTCATGAGCTTACCTCCAGCGGAAACATGTTCCATTCTTGTGTTTTTCACCCAAGCTACTCCACACTCTTGGTTATTGGAGGTTACCAGTCTCTGGAGCTGTGGAACATGGCTGAGAATAAGTGCATGACGATACCGGCGCACGAGTGTGTGATATCTGCTCTAGCACAATCGCCGGTGACCGGCATGGTTGCTTCTGCCAGTCATGATAAATCAgtaaaaatttggaaata 2528 0.4248 MSVKQKKFWFHDSLILEQCFINGDPQLDNLICFLYFELQAKSWEILRSDQLFCLGGEMAQSNWEADKMLDVYIYDYLIKKKLHNTAKSFMTEGKVAPDPVAIDAPGGFLFEWWSVFWDIFIARTNEKHSEAATAYLEAQQTKVKEQQMQLQQLQLMRQAQMQRRDPNHPPLGGPVNAISTEGMLGQSTASALAAKMYEDRMKHSNAMDTETSQPLLDARMALLKSTTNPPGQMVQGNAGSVTAALQQIQARTQQTPQDIKGDVNIGTMQRSMDPSSIYGQGAMQSKPGIVNAGLNPGVGGLTLKGWPLTGIDQVRPGLGPQVQKPLLQGANQFQLLPHQHQQQLLAQVQAQGNIGNSSMYGDMDPQRLRGLARGSLNVKDGQPIANDGSIGSPMQSTSSKINMPQIQQSNLQQQDPLHPQQLQQNNRKRKGPTSSGPANSTGTGNTLGPSNSQPSTPSTHTPGDGVTMAGNLQNVGGVSKDVMLYGSDGAGGLASSTNQLLQDDMEHFADVGSLDDNVESFLSHDDGDGRDLFGTLKRNPSEQATDASKGFSFSEVGSIRKSNSKVVCCHFSSDGKLLASAGHDKKVVLWNMDTLQTDSTSEEHTLIITDVRFRPNSTQLATSSFDTTVRLWDAADPNLCSQSIYTGHTSHVMSLDFNPKKNDVFCSCDANNEIRFWNISQYSSTRVLKGGSAQVRFQPRLGRLLAAASENVVSLFDVEADTLVRTLQGHSTDVHSVCWDTNGDYLATVSQESVRVWSLTSGECIHELTSSGNMFHSCVFHPSYSTLLVIGGYQSLELWNMAENKCMTIPAHECVISALAQSPVTGMVASASHDKSVKIWK 841
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva05g01448 841 CDD WD40 555 841 - -
Bva05g01448 841 Pfam LisH 67 93 IPR006594 GO:0005515
Bva05g01448 841 Gene3D - 537 693 IPR015943 GO:0005515
Bva05g01448 841 SMART WD40_4 638 678 IPR001680 GO:0005515
Bva05g01448 841 SMART WD40_4 720 758 IPR001680 GO:0005515
Bva05g01448 841 SMART WD40_4 552 591 IPR001680 GO:0005515
Bva05g01448 841 SMART WD40_4 802 841 IPR001680 GO:0005515
Bva05g01448 841 SMART WD40_4 594 633 IPR001680 GO:0005515
Bva05g01448 841 SMART WD40_4 761 800 IPR001680 GO:0005515
Bva05g01448 841 SMART WD40_4 681 717 IPR001680 GO:0005515
Bva05g01448 841 Gene3D - 694 841 IPR015943 GO:0005515
Bva05g01448 841 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 645 680 - -
Bva05g01448 841 ProSitePatterns Trp-Asp (WD) repeats signature. 578 592 IPR019775 -
Bva05g01448 841 ProSiteProfiles LIS1 homology (LisH) motif profile. 65 97 IPR006594 GO:0005515
Bva05g01448 841 MobiDBLite consensus disorder prediction 388 473 - -
Bva05g01448 841 PANTHER TRANSCRIPTIONAL COREPRESSOR LEUNIG_HOMOLOG 58 841 - -
Bva05g01448 841 SMART Lish 65 97 IPR006594 GO:0005515
Bva05g01448 841 Coils Coil 136 163 - -
Bva05g01448 841 MobiDBLite consensus disorder prediction 377 473 - -
Bva05g01448 841 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 601 633 - -
Bva05g01448 841 ProSiteProfiles Trp-Asp (WD) repeats profile. 559 600 IPR001680 GO:0005515
Bva05g01448 841 Pfam Coatomer WD associated region 657 767 IPR006692 GO:0005198|GO:0006886|GO:0016192|GO:0030117
Bva05g01448 841 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 559 594 - -
Bva05g01448 841 ProSiteProfiles Trp-Asp (WD) repeats profile. 809 841 IPR001680 GO:0005515
Bva05g01448 841 SUPERFAMILY WD40 repeat-like 553 841 IPR036322 GO:0005515
Bva05g01448 841 PRINTS G protein beta WD-40 repeat signature 578 592 IPR020472 -
Bva05g01448 841 PRINTS G protein beta WD-40 repeat signature 828 841 IPR020472 -
Bva05g01448 841 PRINTS G protein beta WD-40 repeat signature 620 634 IPR020472 -
Bva05g01448 841 ProSiteProfiles Trp-Asp (WD) repeats profile. 645 687 IPR001680 GO:0005515
Bva05g01448 841 Pfam WD domain, G-beta repeat 808 841 IPR001680 GO:0005515
Bva05g01448 841 Pfam WD domain, G-beta repeat 564 591 IPR001680 GO:0005515
Bva05g01448 841 Pfam WD domain, G-beta repeat 604 633 IPR001680 GO:0005515
Bva05g01448 841 ProSiteProfiles Trp-Asp (WD) repeats profile. 601 633 IPR001680 GO:0005515
Bva05g01448 841 ProSiteProfiles Trp-Asp (WD) repeats profile. 727 767 IPR001680 GO:0005515
Bva05g01448 841 PANTHER TRANSCRIPTIONAL REGULATOR OF FILAMENTOUS GROWTH FLO8 58 841 IPR044716 GO:0003714
Bva05g01448 841 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 809 841 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva05g01448 Bva-Chr5 8117588 8126895 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva05g01448 553 801 U-box Gene Family AT2G33340 27.170 1.60e-15 78.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR LUG Bva05g01448 Coatomer_WDAD 1e-07 CL0186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva05g01448 - - gmx:100797756 1332.01