Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva05g01446 ATGTCAACTGGGCAAGTGATCAAGCGTGCCAAATACAAAACTTCTGTTAAAGACCCTGGTACTCCTGGTGTGCTGAAAATgACTGAGAACAAGTTTCTTTTCAGGCCTAATGATCCTTCATCTAACAAAAAGCTCGAAGTGGAGTTCAGATTTATACAGAGTCACAAGAATACCAAGGAGGGATCAAACAAACCGCCATGGCTTAACCTTATACATTCTCAGGGTCATAGTTACATCTTTGAGTTTGAAAGTTTTCCAGATCTTCATGTTTGCCGAGAATTTGTGGGCATTGCGCTTGGCAAGTCTGGAGATGTTGCAAAAGCTGTACCAACAGCTATTTCTGCGGAACAGCTAAGCACGGCTGAAATGGAATTGAGGATTAAGCTATTACGAGAAGATAGCAAATTGCAGAAGCTTCATAAGGAACTTGTTATTGCTGGTAAGCTGACAGAATCAGAGTTTTGGGCTACAAGGAAGAAACTGCTGGATAAAGATGAAAGCAGAAAGTTGAAACAACGGGTTggatttaaaaattctatgatCTTTGACACAAAGCCTACAAGTGATGGTCGGaCAAACCAGGTTACATTTAATTTGACACCAGAGATCAAATATCAGATTTTTGCTTTAAAACCAGCTGTTCACCAGGCATTCCTCAATTTTGTACCCAGCAAGATGACAGAGAAGGATTTCTGGACCAAATACTTTAGAGCTGAATACCTCCATAGAACCAAAAATGCTGTTGCAGCAGCTGCAGAGGCTGCTGAAGATGAGGAACTTGCTGTTTTTCTGAAAGATGATGAGATATTAGAAAGTGAAGCTCGAAAGAAGGTTCGATGGGTTGACCCAACGTTAGACATGGAAGCTGACCAAGGAGATGACTATACTCATCTTCCTGATCATGGGATCTTCCGTGATGGTGGCAAGGAAATATCTGAAGCACAATATCAGCTGTATAAAAGAACATTTTTGCAAGATCTTAACCGACAAGGTGCAGTTGTTCTTGAGGGAAGAACTTTAGATGTGGATTTAGAACATCCAAGAACAGTTGCAGAAGCTCTTGCAAGGACAAGACAGGAATCTGATGGTGATATAGAGCAGGAGAGACTCAACAGAATTTCTCAGATGACCCTGATTGAGGATCTTCAGGCGCAGGACAATCATTGTTTTGCTCCGCTTTGTATCAAGGATCCTCGTGAATACTTTGATTCCCAACAAGCTAATGCAGTGAAAACGTTGGATGATTCACAAGTTGGAATGGAGCAAATAAAATGTAGCTTGCCTTCTGATGAAGCATATGGCTCTTTGAGGGTATCAATATCTAACTTGAAGGCAATGGGGTCACGTGATCCCTTAGTTAGTCCTGAGATTGCTCTTACGATTCTTAATGGATTGACCAAGAATATCTCAAGCACCAAATATCATCTTGGGAAAAATTCCCAGGAGAGTGTCCTTGACATATTGCCTAGCACAACTAAGGAGCAACTACTAGATCATTGGACGTCCAGTCAGGAACTGCTGAGGCATTACTGGTCTTCATATCCAATTACAACACCAAACCTTCATACTAAGGTGAACAGACTGAAAGATGCCATATCACAAATATATTCTAAACTTGAGgAAATAAAGGTATCTGCTCGGTCTGACTTGCGGCACCAGGTTTCCCTTATTGTCCATCCTATGCAACAGGCTCTGGATGCTGCATTATTACACTATGATGCTGACATGCGAAGGAGAACCGCAAGAGGACAGAAGTCCAACGGATATGTCTA 1772 0.4125 MSTGQVIKRAKYKTSVKDPGTPGVLKMTENKFLFRPNDPSSNKKLEVEFRFIQSHKNTKEGSNKPPWLNLIHSQGHSYIFEFESFPDLHVCREFVGIALGKSGDVAKAVPTAISAEQLSTAEMELRIKLLREDSKLQKLHKELVIAGKLTESEFWATRKKLLDKDESRKLKQRVGFKNSMIFDTKPTSDGRTNQVTFNLTPEIKYQIFALKPAVHQAFLNFVPSKMTEKDFWTKYFRAEYLHRTKNAVAAAAEAAEDEELAVFLKDDEILESEARKKVRWVDPTLDMEADQGDDYTHLPDHGIFRDGGKEISEAQYQLYKRTFLQDLNRQGAVVLEGRTLDVDLEHPRTVAEALARTRQESDGDIEQERLNRISQMTLIEDLQAQDNHCFAPLCIKDPREYFDSQQANAVKTLDDSQVGMEQIKCSLPSDEAYGSLRVSISNLKAMGSRDPLVSPEIALTILNGLTKNISSTKYHLGKNSQESVLDILPSTTKEQLLDHWTSSQELLRHYWSSYPITTPNLHTKVNRLKDAISQIYSKLEEIKVSARSDLRHQVSLIVHPMQQALDAALLHYDADMRRRTARGQKSNGYV 590
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva05g01446 590 Gene3D - 120 159 - -
Bva05g01446 590 Pfam BSD domain 195 246 IPR005607 -
Bva05g01446 590 Gene3D BSD domain 177 254 IPR035925 -
Bva05g01446 590 ProSiteProfiles BSD domain profile. 112 166 IPR005607 -
Bva05g01446 590 Pfam TFIIH p62 subunit, N-terminal domain 21 84 IPR013876 -
Bva05g01446 590 SUPERFAMILY PH domain-like 8 94 - -
Bva05g01446 590 ProSiteProfiles BSD domain profile. 191 243 IPR005607 -
Bva05g01446 590 SUPERFAMILY BSD domain-like 116 162 IPR035925 -
Bva05g01446 590 PANTHER TRANSCRIPTION INITIATION FACTOR IIH-RELATED 4 579 IPR027079 GO:0000439|GO:0006289|GO:0006351
Bva05g01446 590 SUPERFAMILY BSD domain-like 195 245 IPR035925 -
Bva05g01446 590 SMART wurzfinal6 112 166 IPR005607 -
Bva05g01446 590 SMART wurzfinal6 191 243 IPR005607 -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF BSD Bva05g01446 PH_TFIIH 1.1e-06 CL0266
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva05g01446 K03141 - gmx:100776016 914.45