Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva05g01444 ATGCATTGCATAGGAGTCTCTTCTGCTCAGGCTGCTAGGTTCTTTACAAGTGAAGGCCAAGTTTTAAGTATGAACAGTTGGGGATCAAGTGGAGGCCAAGAGGCAAATATGAGAGGTTTTCTGCCAAGAGAAGAAATTGACGTTCTCTTGGGCATCAAACTTCCTTTTGCTGAAGGGAATATCCCAGTCAATGAAAATCTGCATTTAGAAGCTATAAATTATGCACAATTTGACCATTTTGCTTTAATCTCCCCAAGGAAATTTGAAGAAGCCAAGAACAATGCTGGAAGATCTGCTCTCAGAAGCCATGCCGAGACTCGTTCCTTCCCTGTTACCAACAATAACAATGATGGAACTCCTGACCAACCAGTTGTGGTTGTGGATTGTGAGCTGAGCTTGAGGGTGGGAGACAGTAGGAAAAAGCAGAAAACTGATGATTCTGATGTTTTTCCACCGGTGGCCGCGGTGTCTCCAAGCAGCCACCCTCCTGAGCCACCCAAACTCAAGCTCGGCTGCGTAATTTGCATGTGTGAGTTGACAGACGCAACGACAACCAAGTGTGGCCATATTTTCTGCAGGGTTTGCCTTATGAAAGCAATTATCAGTCAGCACAAATGCCCCACTTGTAGGCGTAAACTCAGAAAGAATGACATGATTAGGCTCTATCTTCCGGAACCTATCATGTG 686 0.4519 MHCIGVSSAQAARFFTSEGQVLSMNSWGSSGGQEANMRGFLPREEIDVLLGIKLPFAEGNIPVNENLHLEAINYAQFDHFALISPRKFEEAKNNAGRSALRSHAETRSFPVTNNNNDGTPDQPVVVVDCELSLRVGDSRKKQKTDDSDVFPPVAAVSPSSHPPEPPKLKLGCVICMCELTDATTTKCGHIFCRVCLMKAIISQHKCPTCRRKLRKNDMIRLYLPEPIM 228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva05g01444 228 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 163 224 IPR013083 -
Bva05g01444 228 MobiDBLite consensus disorder prediction 94 122 - -
Bva05g01444 228 SMART ring_2 172 209 IPR001841 -
Bva05g01444 228 Pfam Zinc finger, C3HC4 type (RING finger) 172 209 - -
Bva05g01444 228 MobiDBLite consensus disorder prediction 99 121 - -
Bva05g01444 228 ProSiteProfiles Zinc finger RING-type profile. 172 210 IPR001841 -
Bva05g01444 228 MobiDBLite consensus disorder prediction 137 164 - -
Bva05g01444 228 PANTHER ELFLESS, ISOFORM B 68 224 - -
Bva05g01444 228 ProSitePatterns Zinc finger RING-type signature. 187 196 IPR017907 -
Bva05g01444 228 SUPERFAMILY RING/U-box 165 215 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva05g01444 Bva-Chr5 8067377 8071595 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva05g01444 155 224 C3H Transcription Factor Family AT3G07200 50.000 2.93e-17 75.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva05g01444 K22651 - mcha:111016128 110.923