Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva05g01391 ATGGACAAtcaagaccaacgaagaactCACACTCAAGGGCACGAGAATCATGGAGTCCATGTATGTCACAAATGTGGATGGCCTTTTCCTAATCCACACCCTAGTGCCAAGCACAGGCGTGCTCACAAAAGGATCTGTGGAACCATTGAAGGTTATGGACTCTTGGATTCAGAGGGAAGTGCCCATTTAAATGGTTCAGATGATGAACGTCTTTCCGACGATGAACACAAATTGCCAAGTCCGAAAGTCCTGGAAAAGGGTATCAATGAGAAGGGTAGTGGTAAGATTGgagacaaattaaatagaTCAGAAGACGAGGTGTTCTCAGACGCAGTTGCAGACTTTTCAGATAGCGGATTGAGTCCCGGAATTGAGGAACGTTTTCATGAGAGTTCAGACTCAGCAATTAATGTGGAAACAGTTGAcataaaagattcaaaattttcgGAACATTCTGAGAACAAAGTTTTTGATGCTGCAGATGTGAGTCTGTTAACAGTCGATTCAAGTGATGACCTCCGACTGCAAAATCCACAAGGTTTGCAAAGGGATGGAGTTGAGGTGGgaaatacaaaagaattgcAAGGTCAACTGTCAGGCTCTACAGTGGATCTATTGGGGGGTTCTGCAAAGTGTCCCAGTAAAGCTGAAGCCACATCAGATGTATCACCTGAAAATAAGATATCTGCTGGTGAAAAGGATGAGGTCAAATCTGATAGAGATATGGTTGGGATTGTGGTCTCTTCCAATAACATTGTTAGTGAAGTATGTGAAGTGTCTGTGCCCGAGGCAGAAGTTAGTAATATAGTTATGTCAGACCAAAAAATGGTTGATGGATCCGTTGAGTTGAAGGAAAAAGATGGCATTGAGTGCTTTTCTGTGCAGTCCAAAGATGATATTCCCCATGAGGTAAATTCTTTGGTAAGTGGAAATGCTTCCTCAAATGGAATTCAGGTAGACACTCTGCCTGTGCTGCCCTTTGTTACTTCTACTGATTTGGTCAAGActttggaggaaaaaaaagagggaaacCTCAATGTCAATACACTTTCTACGAATGATGGTATAGCTGATGTATCACATCCTCAGAGTGAGTTTGAAGATTTTAAAGATCATGAAGGAATGGTATTACAAAATCCTCTAATGCTACACTCATCTGAAGCATTGAAGCATGAGGAATATGGTTTGAAGGAAAGTGTTACTGAGGAGAACCATTCCAATATCGACTCAATCcaatggagaaaagaaaatgatattctATCTCCAAATATGCATGATATGGAAAGTAGGATTAGGCAGAAGCAGGCTGTGGTTCAAGAAGTGCTTTCTGAAAAGCAGGCTGAAGTTTCTCCAGTAAAGCTCCCAGTTGATGGTTGTCAAAGATTAGATGAAACTGGAACTTCCCTGGATGCTGTGAAATCCAAGATATATGAGAGTCATATGGTTCACTCTTTAGGAGAAAAAGATTCTGATGATGTTCATAGAAGTTCACAACAGATGAATTTGCTAGAAAGTAGGAACGTGGTCTCATCTGATGGGTTAGAAGATTTTAAAGATCAAGCAGTGGTATTAAATAATCCATCTAGACTACACACTTGTGAAGCTTTGAAGCAAGAGGAAGATGACTTGAAAGATGTTTTTACAAAGGATGATCATTCCAGTTTCAACTCGTATAAATTGAACGAAGAAAGTAAGGTTCTCTCTCCCGGCATGCATGTTTTGGATGATGCCATGAAGAAGGAGCAGGTCAGCTGTGAGCCTATGGTTGAAAAAATGCTCTCAGAAAAGCAAGAATCCTCTGCAGTCAAGCATACGGTTGATGATAATCAAATCTCAAAAGAAATTGGATCCCCTGTGGATACCATGAAATGTGTGTTGAATGAGAGTCATATGGTTTACTTTTCTGGAGAACAGGAATGTGAAGATGTTTCTAGAAATTCACAACAGATAGATTCACCAGAAGCTGGTGTTGTGGCCTCATTTAACAAGGAACCTGGGGATACGCCTGTTGATTCTTCAATCAGTCAAACAACTACTGTAACTAGCAAAGATGACACAATCCATCAAGAGATACATAGAACTGAAACAGATGTAGCACTAAATGGCAATCCCAGAGAAGCTGATGAAGAAAATGCTCCTCAATTTGGTGTCAAGCCATCAAGTGATCAATTTAAAGAAGACAATGGTGGTGAAGGCGGTAAAGTTGAAAAACGTGATCAATGTAGGGAAGGTCTTGTTGTGACAGATATTTCATCCCCCACAGAAGCGAACGATTGTTTTGAATCCCCAGTTGTATCAGTGGATGTAGTGAATGTGTCTGCAAGAGAGTCAACAGGTATTGAGAGCGCAAACATCTATGCACTATCAGGTACTAAGGGGGAcataaaagaagatgaaatcaATAACAATAGTGAAGGACAGGATGAACATACTAGAATTGTTGGTACTGTTTCCAATTTACAACAATCAGGTGGTTCAGAACTATTATTGAAGTCTCCAGAAGACCCAGCTAGGAAAGATCCATCACTGTCTCCTCCAAATATTGAGCATTATGCTCAATGTGTTTCTGCTGTTGAAGACAATCGAACTGGAGAACACGAGGAAGCATCTAAAATTAACACTGTGCTTGTCCAAGGTCAAAATGGTAAGAACTTGGTCCAACAGCAGCTTGGTTTGTCTGGAATTGATGCTTCAGTTGAATCCAGCAGCCGGTGTGACAGTTTGGAATGCAACTGGGGCTCTGTTTCAGTTTTCTCCCTTCAATCTGATACACCAGCTGTTAATGATGCCGAAGCTTTATCGCCAACTGATTTGCTGCCACCGACAGAAGCAGGGAAATCCAACATGAACACAAAAGCTGCATCTGAAGGACAGCGATCTGAAAAACTAGAAATGTTTGAACCACTATCTTTCATGACATTGGTTGAACATGGACATTCAATTGGCTCTAaggcttcttcttcttctgaagTCCAGAAGGGACAGAACCCGCAACAACCTAATTCTACATCTTCACAGACTGGTTGGTTTCCCACTCTTTCCCAAGTTGTTAATGAGTctcaaggaagaaagaagaatgaagaaattatAGCCAAGGTAACCAACTGGAGCCCCGGTAAGCAGCACGTCCCTCTGAAGAGCCTCTTGGGCGAGGCATCCCATAGTAACAAACcaaaatctctaaaatatgaagaaaatccGGAGACTCAGAAAAACGGTAAAGTACCCAAAGATAATAACACTTGTGGGTTGACAACCGTTAACTCCATTCTGGGTCCCGAATCGCCTGCAGATCAGGCTGTGAAAGTGGAAGCTGGAAAAGAATGGAATTCTCCAGCAAGGTATCCTGCAGAACtcaagagagagaagaggaaagCCAAGAGCAGACCATACTGGATACAATTTGTGTGCTGCTCCTCGGTGGATCCTCAGCGAAGCTA 3440 0.3927 MDNQDQRRTHTQGHENHGVHVCHKCGWPFPNPHPSAKHRRAHKRICGTIEGYGLLDSEGSAHLNGSDDERLSDDEHKLPSPKVLEKGINEKGSGKIGDKLNRSEDEVFSDAVADFSDSGLSPGIEERFHESSDSAINVETVDIKDSKFSEHSENKVFDAADVSLLTVDSSDDLRLQNPQGLQRDGVEVGNTKELQGQLSGSTVDLLGGSAKCPSKAEATSDVSPENKISAGEKDEVKSDRDMVGIVVSSNNIVSEVCEVSVPEAEVSNIVMSDQKMVDGSVELKEKDGIECFSVQSKDDIPHEVNSLVSGNASSNGIQVDTLPVLPFVTSTDLVKTLEEKKEGNLNVNTLSTNDGIADVSHPQSEFEDFKDHEGMVLQNPLMLHSSEALKHEEYGLKESVTEENHSNIDSIQWRKENDILSPNMHDMESRIRQKQAVVQEVLSEKQAEVSPVKLPVDGCQRLDETGTSLDAVKSKIYESHMVHSLGEKDSDDVHRSSQQMNLLESRNVVSSDGLEDFKDQAVVLNNPSRLHTCEALKQEEDDLKDVFTKDDHSSFNSYKLNEESKVLSPGMHVLDDAMKKEQVSCEPMVEKMLSEKQESSAVKHTVDDNQISKEIGSPVDTMKCVLNESHMVYFSGEQECEDVSRNSQQIDSPEAGVVASFNKEPGDTPVDSSISQTTTVTSKDDTIHQEIHRTETDVALNGNPREADEENAPQFGVKPSSDQFKEDNGGEGGKVEKRDQCREGLVVTDISSPTEANDCFESPVVSVDVVNVSARESTGIESANIYALSGTKGDIKEDEINNNSEGQDEHTRIVGTVSNLQQSGGSELLLKSPEDPARKDPSLSPPNIEHYAQCVSAVEDNRTGEHEEASKINTVLVQGQNGKNLVQQQLGLSGIDASVESSSRCDSLECNWGSVSVFSLQSDTPAVNDAEALSPTDLLPPTEAGKSNMNTKAASEGQRSEKLEMFEPLSFMTLVEHGHSIGSKASSSSEVQKGQNPQQPNSTSSQTGWFPTLSQVVNESQGRKKNEEIIAKVTNWSPGKQHVPLKSLLGEASHSNKPKSLKYEENPETQKNGKVPKDNNTCGLTTVNSILGPESPADQAVKVEAGKEWNSPARYPAELKREKRKAKSRPYWIQFVCCSSVDPQRS 1146
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva05g01391 1146 MobiDBLite consensus disorder prediction 1 20 - -
Bva05g01391 1146 MobiDBLite consensus disorder prediction 62 80 - -
Bva05g01391 1146 MobiDBLite consensus disorder prediction 724 740 - -
Bva05g01391 1146 MobiDBLite consensus disorder prediction 701 740 - -
Bva05g01391 1146 PANTHER PENTATRICOPEPTIDE REPEAT (PPR) SUPERFAMILY PROTEIN 1 512 - -
Bva05g01391 1146 MobiDBLite consensus disorder prediction 941 956 - -
Bva05g01391 1146 ProSitePatterns Zinc finger C2H2 type domain signature. 22 42 IPR013087 -
Bva05g01391 1146 MobiDBLite consensus disorder prediction 57 80 - -
Bva05g01391 1146 PANTHER PENTATRICOPEPTIDE REPEAT (PPR) SUPERFAMILY PROTEIN 514 1141 - -
Bva05g01391 1146 MobiDBLite consensus disorder prediction 1049 1081 - -
Bva05g01391 1146 MobiDBLite consensus disorder prediction 1057 1072 - -
Bva05g01391 1146 PANTHER PENTATRICOPEPTIDE REPEAT (PPR) SUPERFAMILY PROTEIN 1 512 - -
Bva05g01391 1146 MobiDBLite consensus disorder prediction 931 959 - -
Bva05g01391 1146 MobiDBLite consensus disorder prediction 981 1010 - -
Bva05g01391 1146 MobiDBLite consensus disorder prediction 821 847 - -
Bva05g01391 1146 PANTHER PENTATRICOPEPTIDE REPEAT (PPR) SUPERFAMILY PROTEIN 514 1141 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva05g01391 Bva-Chr5 7457235 7462950 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Bva05g01391 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva05g01391 - - gmx:100820280 752.281