Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva05g01378 ATGGCTCCCAATAATTCTACAGAGAATGGAGTGGAGAAAGCATGTCCTCAACTTTCAGAGGATAACGCTTGCCTCTCTGCCATGCTTCTTTCTACCACTCAGGTCTATCCTGCAGTGCTTAATGCTGCTATTGAGCTCAACTTGTTTGAGATCATAGCTAAGGCAACCCCACAGGGTTCACCCTTGTCTGTCTCCGAAATCGCTTCCAATCTTCCAAACCAATA 224 0.4598 MAPNNSTENGVEKACPQLSEDNACLSAMLLSTTQVYPAVLNAAIELNLFEIIAKATPQGSPLSVSEIASNLPNQ 74
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva05g01378 74 Pfam Dimerisation domain 39 72 IPR012967 GO:0046983
Bva05g01378 74 Gene3D - 4 74 IPR036388 -
Bva05g01378 74 SUPERFAMILY "Winged helix" DNA-binding domain 20 73 IPR036390 -
Bva05g01378 74 PANTHER O-METHYLTRANSFERASE 7 74 IPR016461 GO:0008168
Bva05g01378 74 PANTHER CAFFEIC ACID O-METHYLTRANSFERASE 7 74 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva05g01378 Bva-Chr5 7380046 7380270 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva05g01378 17 74 Monolignol Biosynthesis Gene Families AT5G54160 48.276 1.53e-10 53.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva05g01378 - - gmx:100787536 92.0485