Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva05g01376 ATGcactcaaaaagaaataaagaaagaaagaaagagaaatccCAGACTCGAGAATTTATGGCTCCCAATAATTCTGCACAGAATGGAGTGGAGAAAGCATGCACTCAACTTTCAGAGGATAATGCTTGCCTCTCTGCCATGCTTCTTTCTACCACTCAGGTCTATCCTGCAGTGCTTAATGCTGCTATTGAGCTCAACTTGTTTGAGATCATAGCTAAGGCAACCCCACAGGGTTCACCCTTGTCTGTCTCCGGAATCGCTTCCAAGCTTCCAAACCAATACCCAGACTTGGCTCTTAGGCTTGAACGTATGCTGCGTTTGCTTGCCAGTTACTCTCTTCTTGATTGTTCTACTCGCACCAATGAAGATGGTAGCACTGAAAGAGTTTATGGACTCTCAGAAAGTTGTAAATACTTGGTGCCTGATGATAATAAAGGCAACCTTGCTTCTTTCGCTACATTTCTGTCACACAGAGCATTAATGGAAATTTGGTG 494 0.4089 MHSKRNKERKKEKSQTREFMAPNNSAQNGVEKACTQLSEDNACLSAMLLSTTQVYPAVLNAAIELNLFEIIAKATPQGSPLSVSGIASKLPNQYPDLALRLERMLRLLASYSLLDCSTRTNEDGSTERVYGLSESCKYLVPDDNKGNLASFATFLSHRALMEIW 164
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva05g01376 164 Pfam Dimerisation domain 58 109 IPR012967 GO:0046983
Bva05g01376 164 Gene3D - 23 139 IPR036388 -
Bva05g01376 164 MobiDBLite consensus disorder prediction 1 25 - -
Bva05g01376 164 PANTHER CAFFEIC ACID O-METHYLTRANSFERASE 32 164 - -
Bva05g01376 164 SUPERFAMILY "Winged helix" DNA-binding domain 39 143 IPR036390 -
Bva05g01376 164 PANTHER O-METHYLTRANSFERASE 32 164 IPR016461 GO:0008168
Bva05g01376 164 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 47 164 IPR016461 GO:0008168
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva05g01376 Bva-Chr5 7370160 7370654 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva05g01376 35 164 Monolignol Biosynthesis Gene Families AT5G54160 43.077 4.39e-29 107
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva05g01376 K13066 - ag:AAB48059 163.696