Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva05g01355 ATGGCTAACACTATGGCAAGGTCGTTCCTGCAAGTAGCAGCAACAGAGGAGACTGTAACTCCTCTCAGAGTGGTACAGATAGAGGGACTGGTCATTCTGAAGATAATCAAACACTGTAAGGACCACTCACCTGCTTTAGTCACTGGACAACTTCTTGGGCTGGATGTTGGCAGTGTTCTTGAAGTTACTAATTGTTTCCCCTTTCCGattAGGGAGGAGGATGAGGAAATTGAAGCTGATGGTGCTAATTACCAGCTTGAAATGATGAGATGCTTGAGGGAGGTTAATGTTGACAATAACACTGTTGGATGGTACCAATCTACATTGCTAGGTTCCTTTCAGACCGTGGAGCTGATTGAAACCTTCATGAATTACCAGGAGAACATTAGACGATGTGTTTGCATAATATATGATCCATCAAGGTCCGAACAAGGTGTCCTAGCTCTGAAGGCCTTGAAGCTTTCTGATTCATTTATGGAACTCTATAAAAGCAACAACTTCACAGGAGAGAAATTGAGGGAGAAGAACCTATCATGGGTGGATATATTTGAGGAGATACCTatcaaagtttcaaattctGCCCTTATTAGTGCATTCATGACTGAGCTTGAACCAGATACACCAGTCAGTCAGTGTGATTATGATCGTCTCCAATTGTCAACCAGTTCCTTAATGGAGAGGAATATGGAATTTTTGACTGAGTGTATGGATGATTTGTCAATGGAACAACAGAAGTTCCAATACTACTATCGGAGCTTGTCCCGCCAGCAGGCTCAGCAGCAAGCATGGCTTCAGAAGAGAAGGACGGAGAACATGGCACGTAAAGCTGCCGGAGAGGACCCTTTGCCCGAGGAAGATCCTTCAAACCCTATTTTCAAGCCTATCTCTGAGCCCTCACGGTTGGATAGCTTCCTCATAACAAACCAAATCTCCAACTACTGTAACCAAATTAATGGGGTGTCTGGGCAGAGTTTTAACAGACTCTATTTGATGAAGGCACTGCATGAGGATTCATA 1016 0.4321 MANTMARSFLQVAATEETVTPLRVVQIEGLVILKIIKHCKDHSPALVTGQLLGLDVGSVLEVTNCFPFPIREEDEEIEADGANYQLEMMRCLREVNVDNNTVGWYQSTLLGSFQTVELIETFMNYQENIRRCVCIIYDPSRSEQGVLALKALKLSDSFMELYKSNNFTGEKLREKNLSWVDIFEEIPIKVSNSALISAFMTELEPDTPVSQCDYDRLQLSTSSLMERNMEFLTECMDDLSMEQQKFQYYYRSLSRQQAQQQAWLQKRRTENMARKAAGEDPLPEEDPSNPIFKPISEPSRLDSFLITNQISNYCNQINGVSGQSFNRLYLMKALHEDS 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva05g01355 338 ProSiteProfiles MPN domain profile. 25 158 IPR037518 -
Bva05g01355 338 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT H 3 336 - -
Bva05g01355 338 Pfam C-terminal region of eIF3h 143 336 IPR045810 -
Bva05g01355 338 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 -RELATED 3 336 - -
Bva05g01355 338 MobiDBLite consensus disorder prediction 268 282 - -
Bva05g01355 338 CDD MPN_eIF3h 23 286 IPR027524 GO:0003743|GO:0005737|GO:0005852
Bva05g01355 338 Hamap Eukaryotic translation initiation factor 3 subunit H [EIF3H]. 20 337 IPR027524 GO:0003743|GO:0005737|GO:0005852
Bva05g01355 338 Pfam JAB1/Mov34/MPN/PAD-1 ubiquitin protease 23 126 IPR000555 GO:0005515|GO:0008233|GO:0008237
Bva05g01355 338 MobiDBLite consensus disorder prediction 266 294 - -
Bva05g01355 338 SMART pad1_6 24 157 IPR000555 GO:0005515|GO:0008233|GO:0008237
Bva05g01355 338 Gene3D Cytidine Deaminase, domain 2 2 214 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva05g01355 Bva-Chr5 7162537 7169196 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva05g01355 88 337 Eukaryotic Initiation Factors Gene Family AT1G10840 84.400 2.70e-157 439
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva05g01355 K03247 - gmx:100814297 620.157
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva05g01355 05 7162537 7169196 Bva05g01355 05 7162537 7169196 ECH