Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva05g01315 ATGAATCTGAGCGTCAAGGCAATGACAAGTTCTAGTGGAGCTTGGAAAGCCGGTGAACTCGTCTCCGATCAGTTTCCGGCGGGTCTCCGGGTACTCGTGGTAGATGATGATCCCACATGTCTCATGATACTTGAAAAGATGCTTCGCACCTGCCACTATGAAGTCACAAAATGCAATCGAGCGGAGACAGCTCTTTCCCTGCTGAGAGAGAACAAAAGTGGGTTCGACATTGTTATAAGCGATGTACATATGCCAGACATGGATGGCTTCAAACTTCTAGAGCACATTGGTCTAGAAATGGACCTTCCAGTTATCATGATGTCAGCAGATGATGGAAAAAATGTTGTTATGAAAGGTGTTACGCATGGTGCTTGTGATTACTTGATAAAACCTGTCCGAATCGAGGCTTTGAAGAACATATGGCAACACGTGGTTcggaagagaaagaatgaaTGGAAGGATATAGAGCAATCTGGCAGTGCAGAAGAAGGAGATCGACAGCAGAAGCAATCTGCTGATGAAGCTGACTACTCATCCTCAGCAAATGAAGGCAATTGGAAAAACTCGAAGAAGAGGCGGGATGAAGAGGAAGATGCAGAAGAGAGGGAAGACACATCCACTCTAAAGAAGCCACGAGTTGTTTGGTCAGTTGAGCTTCATCAACAGTTTGTGGCAGCTGTGAATCAACTGGGAATTGACAaGGCTGTGCctaaaaaaattctagagTTGATGAATGTTCCTGGGCTCACCAGAGAAAATGTTGCTAGCCACCTCCAGAAATACCGTCTGTATCTTCGAAGGTTGAGTGGAGTTTCTCAGCACCAGGGCAACTTGAGCAACTCTTTCATCAGCACGCAAGATACAACCTTTGGATCAATTTCTTCGCTTAATGGAATTGATCTCCAAACTCTTGCTGGTCAGATCCCGGCACAAAATCTTGCAACACTTCAGGCAGCAGCACTTGGTAGATCAGCTGCAAAAACTGGAGTACCCATGTCCGTTGTTGATCAAAGGAACCTTTTCAGTTTTGAAAACCCAAGATTAAGATTTGGAGATGGGCAACAGCAACATATGAGCAGTAATAAGCCCATGAACTTGCTTCATGGAATTCCTACTAATATGGAGCCAAAACAACTTGCCAATTTGCACCATTCTACTCAATCCCTTGGAGGCTTGAATATACGAGTCAATGCTACAACTCCACAGAGCAACCCCTTATTAATGCAGATGGCTCAATCCCAACCAAGAGGCCCGATATTAAGTGAAAATTCTGCTTCTCATGTTCCCAGGCTTCCAACATCTATGGCGCCTACCATAACAGGTGGAATCTCTAATGGTGTTCTAGGCAGAAATGGGATTGCCGATGTTAGCAGAGGAACAGCATATAATCCAATCCCACAAACCTCACCAATGTTGAGTTTTCCTGGGAACCAAAGCACAGAAATATCTGTCAACAGTTTTCCTCTGGGAAGTACTCCAGGAATATCCAGTATGACATCAAAAGGAAGCTTCCAAGACGAAGTTACTTCTGGGATGAAAGGATCTAGTGGATTTATTCCAAGTTATGATATCTTCAATGATCTGCAGCAGCAGAAGTCTAATGATTGGGGGTTACAAAACGTGGGCCTGACATATGATGCCTCGCAGCATGTAAGTCCCTTGCAAGGTAACATTGATGTCTCACCATCAGTTCTAGTCCATCAAAGTTTCCCTTCTACCCAACAAGCTGGACAGAATAGAGATGCTACTTCTATTGGGAAAGCTATGTACTCTCTAGGGGAAGGCATGGAACAACGTAACCTCCAAAATATCGGTCAAAACCTCGATACCCTTCTTGCTGACAATTCTGTTAGGGTTAAGACTGAAAGAGTTCCTGACACAAGCTCCCAAACTAACCTCTTCACTGAGCATTATGGGCAAGAGGATCTTATGAGTGCTCTTCTGAAACAGCAACAAGAAGGCATGGGACCAGCTGAGAGTGAGTTTGACTTCGATGGATATTCCATGGACAACATTCCCGTCTA 2024 0.4382 MNLSVKAMTSSSGAWKAGELVSDQFPAGLRVLVVDDDPTCLMILEKMLRTCHYEVTKCNRAETALSLLRENKSGFDIVISDVHMPDMDGFKLLEHIGLEMDLPVIMMSADDGKNVVMKGVTHGACDYLIKPVRIEALKNIWQHVVRKRKNEWKDIEQSGSAEEGDRQQKQSADEADYSSSANEGNWKNSKKRRDEEEDAEEREDTSTLKKPRVVWSVELHQQFVAAVNQLGIDKAVPKKILELMNVPGLTRENVASHLQKYRLYLRRLSGVSQHQGNLSNSFISTQDTTFGSISSLNGIDLQTLAGQIPAQNLATLQAAALGRSAAKTGVPMSVVDQRNLFSFENPRLRFGDGQQQHMSSNKPMNLLHGIPTNMEPKQLANLHHSTQSLGGLNIRVNATTPQSNPLLMQMAQSQPRGPILSENSASHVPRLPTSMAPTITGGISNGVLGRNGIADVSRGTAYNPIPQTSPMLSFPGNQSTEISVNSFPLGSTPGISSMTSKGSFQDEVTSGMKGSSGFIPSYDIFNDLQQQKSNDWGLQNVGLTYDASQHVSPLQGNIDVSPSVLVHQSFPSTQQAGQNRDATSIGKAMYSLGEGMEQRNLQNIGQNLDTLLADNSVRVKTERVPDTSSQTNLFTEHYGQEDLMSALLKQQQEGMGPAESEFDFDGYSMDNIPV 674
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva05g01315 674 CDD REC_typeB_ARR-like 31 145 - -
Bva05g01315 674 Pfam Myb-like DNA-binding domain 212 262 IPR001005 -
Bva05g01315 674 MobiDBLite consensus disorder prediction 153 172 - -
Bva05g01315 674 Pfam Response regulator receiver domain 31 139 IPR001789 GO:0000160
Bva05g01315 674 Gene3D - 207 269 - -
Bva05g01315 674 SMART REC_2 29 141 IPR001789 GO:0000160
Bva05g01315 674 SUPERFAMILY CheY-like 28 153 IPR011006 -
Bva05g01315 674 PANTHER TWO-COMPONENT RESPONSE REGULATOR 6 646 IPR045279 GO:0009736
Bva05g01315 674 MobiDBLite consensus disorder prediction 186 207 - -
Bva05g01315 674 SUPERFAMILY Homeodomain-like 207 267 IPR009057 -
Bva05g01315 674 MobiDBLite consensus disorder prediction 153 207 - -
Bva05g01315 674 Gene3D - 29 168 - -
Bva05g01315 674 ProSiteProfiles Response regulatory domain profile. 30 145 IPR001789 GO:0000160
Bva05g01315 674 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 209 266 IPR017930 -
Bva05g01315 674 MobiDBLite consensus disorder prediction 655 674 - -
Bva05g01315 674 PIRSF RR_ARR_type-B 7 664 IPR017053 GO:0003677|GO:0003700|GO:0009736
Bva05g01315 674 PANTHER TWO-COMPONENT RESPONSE REGULATOR 6 646 - -
Bva05g01315 674 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 210 263 IPR006447 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva05g01315 Bva-Chr5 6921418 6925420 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva05g01315 64 674 Response Regulator Gene Family AT3G16857 51.745 0.0 553
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Bva05g01315 Response_reg 1.2e-23 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva05g01315 - K14491 gmx:100814930 1059.28
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva05g01315 05 6921418 6925420 Bva06g00262 06 4250669 4254540 BWGD
Bva05g01315 05 6921418 6925420 Bva05g01315 05 6921418 6925420 ECH