Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva05g01311 ATGTCGCTGAGGCCTAATGCTAGAACCGAGGTTCGCCGCAACCGCTACAAGGTGGCCGTCGACGCTGATGAGGGCCGCCGGCGGAGAGAGGACAATATGGTTGAGATCCGAAAGAGCAAGCGCGAGGAGAGCTTGCTGAAGAAGCGTCGGGAAGGTCTACAAGCTCAGCAGCAGTTCCCTGCTACCATTCAAACTTCAACTGTTGAGAAAAAGTTAGAGAGTCTTCCTTCAATGGTTGCTGGGGTTTGGTCGGATGATAGTAGTATGCAGTTGGAAGCCACTACGCAATTTAGGAAGCTGCTTTCGATTGAACGGAGCCCTCCCATTGAGGAAGTTATTCAGTCTGGTGTTGTTCCTCGTTTTGTTGAGTTTCTCGTTAGGGAGGATTTCCCCCAACTTCAGtttgaGGCAGCATGGGCTCTCACAAACATTGCATCAGGTACTTCTGAGAACACCAAGGTTGTAATTGATCATGGGGCTGTCCCAATATTTGTTCAGCTACTTAGTTCTCCAAGTGATGATGTCCGGGAGCAGGCTGTGTGGGCATTGGGGAATGTCGCTGGTGATTCCCCTAGGTGCCGTGATCTTGTTCTTAGCCATGGGGCCCTGGTCCCACTCTTGTCCCAATTGAATGAGCATGCAAAACTTTCAATGCTGAGAAATGCCACATGGACACTATCCAATTTTTGCAGGGGAAAACCCCAGCCTCCATTTGAGCAGGTAAGGCCAGCACTTCCAGCTCTTGAGCGTTTGGTGTTTTCAAATGATGAGGAAGTCCTGACAGATGCTTGCTGGGCACTATCATATCTTTCTGATGGAACAAATGACAAAATCCAAGCAGTTATTGAGGCAGGTGTATGTGGCCGGCTAGTGCAGCTCCTTCTGCACCCATCACCTTCAGTGCTTATTCCAGCCCTTCGCACAGTGGGAAATATTGTGACTGGAGATGATATGCAGACTCAGTGTATCATCAGTCATGGTGCGCTGCCATGCCTTTTGAGCTTGTTGAcacataatcataaaaaaagcaTCAAGAAAGAAGCTTGCTGGACCATATCAAACATCACAGCTGGAAACAGAGAACAGATACAGGCGGTTATTGAAGCTGGTCTTATTGCTCCCCTCGTCAATCTTCTACAAAATGCTGAGTTTGATATTAAGAAAGAGGCTGCATGGGCAATCTCAAATGCTACATCTGGTGGCACTCATGACCAGATTAAGTATTTGGTGAGTCAGGGTTGCATAAAGCCTCTCTGTGATCTGCTTGTCTGCCCCGACCCAAGAATTGTCACTGTTTGTTTAGAAGGCTTAGAAAATATTCTCAAGGTTGGGGAAGCTGAGAAGAATCTTGGTAACAGTGGAGATGTCAACTTATACGCTCAGATGATAGATGATGCTGAGGGATTAGAGAAGATTGAAAATCTGCAAAGTCACGACAACAATGAAATATACGAGAAGGCTGTTAAAATTCTCGAAACATACTGGTTGGAAGATGACGACGAGGCACTGCCTCCAGGTGATGGAGCTCAACCTGGTTTCAACTTTGGAGGCAATGAGGTTCCAGTTCCATCTGGTGGATTCAACTTTGGTTG 1592 0.4667 MSLRPNARTEVRRNRYKVAVDADEGRRRREDNMVEIRKSKREESLLKKRREGLQAQQQFPATIQTSTVEKKLESLPSMVAGVWSDDSSMQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLVREDFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVQLLSSPSDDVREQAVWALGNVAGDSPRCRDLVLSHGALVPLLSQLNEHAKLSMLRNATWTLSNFCRGKPQPPFEQVRPALPALERLVFSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCGRLVQLLLHPSPSVLIPALRTVGNIVTGDDMQTQCIISHGALPCLLSLLTHNHKKSIKKEACWTISNITAGNREQIQAVIEAGLIAPLVNLLQNAEFDIKKEAAWAISNATSGGTHDQIKYLVSQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGNSGDVNLYAQMIDDAEGLEKIENLQSHDNNEIYEKAVKILETYWLEDDDEALPPGDGAQPGFNFGGNEVPVPSGGFNFG 530
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva05g01311 530 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 327 370 IPR000225 GO:0005515
Bva05g01311 530 SUPERFAMILY ARM repeat 6 500 IPR016024 -
Bva05g01311 530 Gene3D - 11 50 IPR036975 GO:0006606
Bva05g01311 530 Coils Coil 36 56 - -
Bva05g01311 530 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 370 398 IPR000225 GO:0005515
Bva05g01311 530 Pfam Armadillo/beta-catenin-like repeat 359 398 IPR000225 GO:0005515
Bva05g01311 530 Pfam Armadillo/beta-catenin-like repeat 275 313 IPR000225 GO:0005515
Bva05g01311 530 Pfam Armadillo/beta-catenin-like repeat 148 187 IPR000225 GO:0005515
Bva05g01311 530 Pfam Armadillo/beta-catenin-like repeat 190 231 IPR000225 GO:0005515
Bva05g01311 530 Pfam Armadillo/beta-catenin-like repeat 403 440 IPR000225 GO:0005515
Bva05g01311 530 Pfam Armadillo/beta-catenin-like repeat 106 146 IPR000225 GO:0005515
Bva05g01311 530 Pfam Armadillo/beta-catenin-like repeat 244 271 IPR000225 GO:0005515
Bva05g01311 530 Pfam Armadillo/beta-catenin-like repeat 317 357 IPR000225 GO:0005515
Bva05g01311 530 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 116 159 IPR000225 GO:0005515
Bva05g01311 530 ProSiteProfiles IBB domain profile. 1 58 IPR002652 GO:0006606|GO:0061608
Bva05g01311 530 PANTHER IMPORTIN ALPHA 2 521 - -
Bva05g01311 530 PANTHER IMPORTIN SUBUNIT ALPHA 2 521 - -
Bva05g01311 530 SMART arm_5 189 231 IPR000225 GO:0005515
Bva05g01311 530 SMART arm_5 233 272 IPR000225 GO:0005515
Bva05g01311 530 SMART arm_5 359 399 IPR000225 GO:0005515
Bva05g01311 530 SMART arm_5 316 357 IPR000225 GO:0005515
Bva05g01311 530 SMART arm_5 105 146 IPR000225 GO:0005515
Bva05g01311 530 SMART arm_5 402 442 IPR000225 GO:0005515
Bva05g01311 530 SMART arm_5 274 314 IPR000225 GO:0005515
Bva05g01311 530 SMART arm_5 148 188 IPR000225 GO:0005515
Bva05g01311 530 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 159 201 IPR000225 GO:0005515
Bva05g01311 530 Pfam Importin beta binding domain 12 95 IPR002652 GO:0006606|GO:0061608
Bva05g01311 530 PIRSF Importin_alpha 2 529 IPR024931 GO:0005737|GO:0006606|GO:0061608
Bva05g01311 530 Gene3D - 73 496 IPR011989 -
Bva05g01311 530 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 243 285 IPR000225 GO:0005515
Bva05g01311 530 Pfam Atypical Arm repeat 457 501 IPR032413 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva05g01311 Bva-Chr5 6899698 6903214 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva05g01311 131 391 U-box Gene Family AT3G46510 25.287 1.23e-10 62.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva05g01311 K15042 - gmx:100792804 1006.9
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva05g01311 05 6899698 6903214 Bva06g00266 06 4280841 4281086 BWGD
Bva05g01311 05 6899698 6903214 Bva05g01311 05 6899698 6903214 ECH
Bva05g01311 05 6899698 6903214 Bva13g03256 13 22605391 22610060 ECH
Bva05g01311 05 6899698 6903214 Bva04g03252 04 26328277 26334136 ECH