Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva05g01308 ATGGGGAGACAACCTTGCTGTGAGAAAGTAGGGTTGAAGAAAGGAAGATGGACTGCAGAAGAGGATAGGATCTTGACACAGTACATCCAAGAAAATGGTGAAGGATCATGGAGAAACCTACCCAAGAATGCAGGTTTGTTGAGATGTGGGAAGAGTTGCAGATTGAGATGGATCAACTACTTGAGAGCAGATGTGAAGAGAGGCAACATCACTCCTCAAGAGGAAGAGATCATTGTGAAGCTGCATGCTGTTCTCGGCAATAGATGGTCTGTAATAGCAGGTCATTTACCAGGAAGAACAGATAATGAAATTAAGAACTACTGGAACTCTCATTTGAGGAGAAAAATTTACTGCTTCATGAAACCTTCAAATGAGTCCTTGCCACCCATTGACATGGCAGCTGTAAGCGCCGCCGCCAATTCCAAGCGAAGAGGCGGTCGAGGGCGACCAACTCAACCATCTACCCAGCGAGAGGACAGTAACTCAGATTTAAGCCAAAGGAATGCAAGCATGTCTCAAAGAAATGCAGAAGTTGATGAATTTCCCATACCAAGTTCTGGGTCTTGGAGCCTAAGGCGCCAAGAAAATGAATCCAGAAAACGCATTGGTGTGGATCCATCATGCTACAACATGAATGGACAAGCTGAGGAGATGGCACCATATCAATGGCTAGATGATGAAATCATGAAACTTAGCTACATGTTTGAAAATGGGGTACTTGTAAACCCAAATGGGTATGCAGCAAATGAAGAGGAACTCAACAACATTAATGGCAGAGAACATGAGATGATGGATAAGGAGATGATGAGAACAAGTACAGAGGAGAGCAATGGTGATGTTTGGAGCTCATCAAATGCAGAGAGTGGAGAGTGGTATAATAGCTCTTCTTCAGTGAACTGTGAGTATGATTATCATTGGCTTGATAACTGGGATTTGTCAGCTGGTTCTCTTGAATCACATGATAATCAATGGGACTATTATGAAGAGGGAGACCAGATGAAGACTACTGGTTTGTGGGGAAATCATGGTTATGGCAGTGCTGCTCAACTAGATAACTTTCATCGGTA 1067 0.4339 MGRQPCCEKVGLKKGRWTAEEDRILTQYIQENGEGSWRNLPKNAGLLRCGKSCRLRWINYLRADVKRGNITPQEEEIIVKLHAVLGNRWSVIAGHLPGRTDNEIKNYWNSHLRRKIYCFMKPSNESLPPIDMAAVSAAANSKRRGGRGRPTQPSTQREDSNSDLSQRNASMSQRNAEVDEFPIPSSGSWSLRRQENESRKRIGVDPSCYNMNGQAEEMAPYQWLDDEIMKLSYMFENGVLVNPNGYAANEEELNNINGREHEMMDKEMMRTSTEESNGDVWSSSNAESGEWYNSSSSVNCEYDYHWLDNWDLSAGSLESHDNQWDYYEEGDQMKTTGLWGNHGYGSAAQLDNFHR 355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva05g01308 355 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Bva05g01308 355 CDD SANT 16 61 IPR001005 -
Bva05g01308 355 Gene3D - 71 116 - -
Bva05g01308 355 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Bva05g01308 355 MobiDBLite consensus disorder prediction 147 175 - -
Bva05g01308 355 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Bva05g01308 355 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Bva05g01308 355 Gene3D - 13 66 - -
Bva05g01308 355 CDD SANT 71 112 IPR001005 -
Bva05g01308 355 SMART sant 66 114 IPR001005 -
Bva05g01308 355 SMART sant 13 63 IPR001005 -
Bva05g01308 355 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Bva05g01308 355 PANTHER MYB TRANSCRIPTION FACTOR 2 306 - -
Bva05g01308 355 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Bva05g01308 355 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Bva05g01308 355 MobiDBLite consensus disorder prediction 136 198 - -
Bva05g01308 355 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 2 306 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva05g01308 Bva-Chr5 6871577 6874613 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva05g01308 1 231 MYB Transcription Factor Family AT5G49330 51.515 2.22e-73 229
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Bva05g01308 Myb_DNA-binding 2.7e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva05g01308 K09422 - gmx:100805532 402.905
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva05g01308 05 6871577 6874613 Bva05g01308 05 6871577 6874613 ECH