Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva05g01275 ATGGCTTCAGCTAGCAGAGCAGCAAATTCTGTACTTCAGGTTCACTCTTCGGCCACGGGAACAAGCCACGGAGGAGGCCAAAATACAGAATCAATGAGCAAAGCAATTGCTCAGTTTACTGAGGATGCTCGCCTCCATGCCGTCTTCGAGCAATCTGGTGAGTCTGGCAGGTCTTTTGATTACTCAAAATCCTTAAGAACCACAAACCAATCGGTGCCGGAGCAGCAAATTAGCGCTTACCTATTGAAAATTCAGAGAGGTGGGTATATTCAACCTTTTGGGTGCATGATTGCCGTCGACCAAGCCACTTTTCGGGCTCTGGGGTACAGCGAAAACGCTTGGGATATGCTGGGTATTAATCCTCAATCGGTGCCGAATCTAGAAAAGGATGAAATTTTCTCGGTTGGAAGTGATGTTCGGACGCTTTTCACGCACCCGAGTGTGGTTCTTCTTGAAAAGGCATTCGGAGCACGGGAAATCACCCTGTTGAACCCCCTTTGGATTCATTCTAAGAACTCGGGGAAACCCTTTTATGCGATTTTGCATAGAATTGATGttgggattgtgattgatttgGAGCCTGCGAGAACAGAGGACCCTGCCCTGTCCATTGCTGGAGCGGTTCAGTCCCAGAAGCTAGCGGTGCGTGCAATTTCGCAGTTGCAGTCTCTTCCTGGTGGAGATATAAAGCTTTTATGTGATACTGTAGTTGAGAGTGTTAGAGAGCTGACGGGTTATGATAGGGTGATGGTGTATAAATTTCACGAGGATGAGCATGGTGAGGTTGTTGCTGAGAGTAAGAGGGCAGATTTGGAGCCATACATAGGTTTGCATTATCCTTCTACTGATATTCCTCAGGCTTCAAGGTTTTTGTTGAAGCAGAACCGAGTTAGGATGATTGTAGACTGCCATGCCACTCCTGTTAGAGTGATTCAGGATGAAGGGCTTATACAGTCTCTGTCTTTGGTTGGATCAACACTTCGTGCTCCACATGGTTGCCATGCTCAGTATATGGCCAATATGGGATCAATTGCTTCATTGGCAATGGCAGTCATTATCAATGGGAATGATGAGGAAGCCATTGGGGGTCGTAACACAATGAGGTTATGGGGTCTGGTTGTCTGCCATCATACTTCTGCTCGGTGCATTCCTTTCCCCGTACGCTATGCTTGTGAGTTCCTTATGCAGGCCTTTGGGCTCCAACTAAATATGGAACTCCAATTGGCGTCACAATTACTGGAAAAACGTGTTTTAAGGACTCAAACTCTCTTGTGTGACATGCTTCTTCGAGAGTCTCCTACTGCTATTGTTACTCAAAGCCCAAGTATAATGGACCTTGTGAAGTGTGATGGAGCAGCCCTTTATACCCAAGGGAACAACCATCCTTTAGGTGTCACTCCATCTGAGTCCCAAATAAAGGATATTATAGAGTGGTTGTTGGCCTTCCATGGAGATTCAACTGGTTTAAGCACTGATAGTCTGGCTGATGCTGGGTATCCTGGAGCCACCTCTCTTGGCGATGCAGTTTGTGGGATGGCTGTTGCTTATATCACAAAAAAGGATTTTCTATTCTTGTTCCGATCTCATACAGCAAAAGAGATCAAATGGGGTGGTGCAAAGCATCACCCAGAGGACAAGGATGATGGACAAAGAATGCATCCACGTTCTTCATTCAAGGCATTTTTGGAAGTGGTAAAAAGGCGCAGTATGCCTTGGGAGAATGCAGAAATGGATGCAATTCACTCTTTGCAGCTCATTCTGCGAGACTCATTTAGAGATGCTGATCAAAGCAATTCTAAAGCTGTTATACATTCTCAAGTTGGGGACCTGGATTTGCAAGGGTTGGATGAGCTAAGTTCTGTGGCTAGAGAAATGGTTAGATTGATAGACACTGCCACTGCTCCCATATTTGCCATAGATGTTGATGGTTGCATAAATGGGTGGAATGAAAAGGTTGCAGAATTGACTGGACTTTCAGTTGAGGATGCTATGGGGAAATCTTTTGCTCATGATCTAGTGTATAAGGAGTCTGAAGAAATTGTAGAAAGACTACTTTCTCGTGCTTTAAGAGGTGATGAAGATAAGAATGTTGAGATAAAAATGAGGACATTTGGCCCAGAGCACCATGAAAAAGCAGTTTTTGTGGTGGTCAATGCTTGCTCCAGTAAggattatacaaataaaattgttggAGTATGCTTTGTTGGTCAAGATGTTACTGGTCAAAAAGTGGTAATGGATAAGTTTATCCACATTCAAGGGGCCTACAAGGCTATTGTTCATAGTCCAAGTCCTTTGATCCCTCCCGTTTTTGCTTCAGATGATAACACATGCTGCTCAGAGTGGAATGCTGCTATGGAAAAACTTACTGGTTGGGCTTGTGGAGATGTCATGGGAAAAATGTTGGTAGGAGAGGTTTTTGGCAGTTGCTGTCGACTGAAGGGTCCAGATGCACTAACCAAGTTCATGATTGTTTTGCACAATGCACTTGGTGGACAGGATACAGATAAattcccattttctttccttgatcGGAATGGAAAATATGTTCAAGCTCTCTTGACTGCTAATAAGAGGGTTAACATGGAGGGTCAGGTTATTGGGGCTTTCTGCTTCTTGCAAATTGCAAGCCCTGAACTTCAACAGGCTCTGAAAGTCCAGAGGGAACAGGAGAAGAAATGCTTTGCAAGGATGAAAGAGTTAGCTTACATTTGCCAGGAAATAAAGAATCCACTAAGTGGAATACGGTTCACAAATTCTCTTTTGGAGGCTACAGACTTGACTGATGATCAAAAGCAGTTTCTTGAGACTAGTACTGCTTGTGAAAAGCAGATGAATATTATACGAGATGTTGATCTGGAGAGCATTGAGGATGGGTCCTTGGAGCTTGAAAAGGGAGAATTCTTACTTGGAAGTGCCATAAATGCGGTTGTTAGCCAAGTTATGTTGTTGCTTAGAGAAAGAAACTTACAGTTGATTCGTGATATTCCTGAAGAAATCAAGATGTTTTCCGTTTATGGTGATCAGTTGAGAATTCAACAGGTCCTGGCTGATTTCTTGTTGAATATGGTGCGCTATGCACCATCTCCAGATGGTTGGGTGGAGATTCAAGTTTGTCCaagattaaaacaaatttctgATGAACTTACGCTTCTTCATACTGAATTCAGGATGGTATGTCCTGGTGAAGGTCTTCCTCCTGCATTAATTCAAGACATGTTCAATAGGAGCTGTTGGGGGAGTCAAGAAGGCTTAGGGCTGAGCATGTGCAGGAAGATTCTAAATCTAATGAATGGTGAAGTACAGTATATTAGAGAGTCAGAGCGATGCTGCTTCTTAATTATTCTTGAACTGCCCGTGACACGGAGAGGCTCTAAGAGTGTGAACTA 3389 0.4299 MASASRAANSVLQVHSSATGTSHGGGQNTESMSKAIAQFTEDARLHAVFEQSGESGRSFDYSKSLRTTNQSVPEQQISAYLLKIQRGGYIQPFGCMIAVDQATFRALGYSENAWDMLGINPQSVPNLEKDEIFSVGSDVRTLFTHPSVVLLEKAFGAREITLLNPLWIHSKNSGKPFYAILHRIDVGIVIDLEPARTEDPALSIAGAVQSQKLAVRAISQLQSLPGGDIKLLCDTVVESVRELTGYDRVMVYKFHEDEHGEVVAESKRADLEPYIGLHYPSTDIPQASRFLLKQNRVRMIVDCHATPVRVIQDEGLIQSLSLVGSTLRAPHGCHAQYMANMGSIASLAMAVIINGNDEEAIGGRNTMRLWGLVVCHHTSARCIPFPVRYACEFLMQAFGLQLNMELQLASQLLEKRVLRTQTLLCDMLLRESPTAIVTQSPSIMDLVKCDGAALYTQGNNHPLGVTPSESQIKDIIEWLLAFHGDSTGLSTDSLADAGYPGATSLGDAVCGMAVAYITKKDFLFLFRSHTAKEIKWGGAKHHPEDKDDGQRMHPRSSFKAFLEVVKRRSMPWENAEMDAIHSLQLILRDSFRDADQSNSKAVIHSQVGDLDLQGLDELSSVAREMVRLIDTATAPIFAIDVDGCINGWNEKVAELTGLSVEDAMGKSFAHDLVYKESEEIVERLLSRALRGDEDKNVEIKMRTFGPEHHEKAVFVVVNACSSKDYTNKIVGVCFVGQDVTGQKVVMDKFIHIQGAYKAIVHSPSPLIPPVFASDDNTCCSEWNAAMEKLTGWACGDVMGKMLVGEVFGSCCRLKGPDALTKFMIVLHNALGGQDTDKFPFSFLDRNGKYVQALLTANKRVNMEGQVIGAFCFLQIASPELQQALKVQREQEKKCFARMKELAYICQEIKNPLSGIRFTNSLLEATDLTDDQKQFLETSTACEKQMNIIRDVDLESIEDGSLELEKGEFLLGSAINAVVSQVMLLLRERNLQLIRDIPEEIKMFSVYGDQLRIQQVLADFLLNMVRYAPSPDGWVEIQVCPRLKQISDELTLLHTEFRMVCPGEGLPPALIQDMFNRSCWGSQEGLGLSMCRKILNLMNGEVQYIRESERCCFLIILELPVTRRGSKSVN 1129
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva05g01275 1129 Gene3D PAS domain 769 876 - -
Bva05g01275 1129 ProSiteProfiles Histidine kinase domain profile. 903 1122 IPR005467 -
Bva05g01275 1129 Pfam PAS fold 624 739 IPR013767 GO:0006355
Bva05g01275 1129 Pfam PAS fold 756 874 IPR013767 GO:0006355
Bva05g01275 1129 CDD HATPase_Phy-like 1006 1118 IPR044767 -
Bva05g01275 1129 SMART HisKA_10 896 959 IPR003661 GO:0000155|GO:0007165
Bva05g01275 1129 Gene3D - 411 584 IPR043150 -
Bva05g01275 1129 SUPERFAMILY PYP-like sensor domain (PAS domain) 628 736 IPR035965 -
Bva05g01275 1129 Gene3D - 877 958 - -
Bva05g01275 1129 SMART gaf_1 228 416 IPR003018 GO:0005515
Bva05g01275 1129 PANTHER TWO-COMPONENT HISTIDINE KINASE 15 1123 - -
Bva05g01275 1129 SMART HKATPase_4 1007 1120 IPR003594 -
Bva05g01275 1129 PIRSF Phytochrome_conventional 12 1127 IPR012129 GO:0006355|GO:0009585|GO:0009881|GO:0017006|GO:0042803
Bva05g01275 1129 Gene3D PAS domain 83 331 - -
Bva05g01275 1129 SUPERFAMILY GAF domain-like 208 403 - -
Bva05g01275 1129 CDD PAS 766 874 IPR000014 -
Bva05g01275 1129 Pfam His Kinase A (phospho-acceptor) domain 900 959 IPR003661 GO:0000155|GO:0007165
Bva05g01275 1129 ProSiteProfiles PAS repeat profile. 621 692 IPR000014 -
Bva05g01275 1129 ProSiteProfiles PAS repeat profile. 755 807 IPR000014 -
Bva05g01275 1129 Pfam GAF domain 228 406 IPR003018 GO:0005515
Bva05g01275 1129 SMART pas_2 623 690 IPR000014 -
Bva05g01275 1129 SMART pas_2 754 824 IPR000014 -
Bva05g01275 1129 TIGRFAM sensory_box: PAS domain S-box protein 628 743 IPR000014 -
Bva05g01275 1129 Gene3D PAS domain 619 743 - -
Bva05g01275 1129 ProSiteProfiles Phytochrome chromophore attachment site domain profile. 228 396 IPR016132 -
Bva05g01275 1129 CDD HisKA 896 951 IPR003661 GO:0000155|GO:0007165
Bva05g01275 1129 Pfam PAS fold 79 195 IPR013654 GO:0006355
Bva05g01275 1129 Gene3D - 209 567 IPR029016 -
Bva05g01275 1129 PANTHER PHYTOCHROME 15 1123 - -
Bva05g01275 1129 SUPERFAMILY GAF domain-like 414 591 - -
Bva05g01275 1129 SUPERFAMILY PYP-like sensor domain (PAS domain) 84 196 IPR035965 -
Bva05g01275 1129 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 971 1116 IPR036890 -
Bva05g01275 1129 CDD PAS 632 739 IPR000014 -
Bva05g01275 1129 ProSitePatterns Phytochrome chromophore attachment site signature. 328 337 IPR013516 -
Bva05g01275 1129 Gene3D - 959 1124 IPR036890 -
Bva05g01275 1129 PRINTS Phytochrome signature 436 456 IPR001294 GO:0006355|GO:0009584
Bva05g01275 1129 PRINTS Phytochrome signature 243 262 IPR001294 GO:0006355|GO:0009584
Bva05g01275 1129 PRINTS Phytochrome signature 624 640 IPR001294 GO:0006355|GO:0009584
Bva05g01275 1129 PRINTS Phytochrome signature 643 658 IPR001294 GO:0006355|GO:0009584
Bva05g01275 1129 PRINTS Phytochrome signature 328 349 IPR001294 GO:0006355|GO:0009584
Bva05g01275 1129 PRINTS Phytochrome signature 717 734 IPR001294 GO:0006355|GO:0009584
Bva05g01275 1129 PRINTS Phytochrome signature 143 165 IPR001294 GO:0006355|GO:0009584
Bva05g01275 1129 PRINTS Phytochrome signature 554 572 IPR001294 GO:0006355|GO:0009584
Bva05g01275 1129 PRINTS Phytochrome signature 521 540 IPR001294 GO:0006355|GO:0009584
Bva05g01275 1129 PRINTS Phytochrome signature 737 757 IPR001294 GO:0006355|GO:0009584
Bva05g01275 1129 SUPERFAMILY PYP-like sensor domain (PAS domain) 769 872 IPR035965 -
Bva05g01275 1129 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 1007 1118 IPR003594 -
Bva05g01275 1129 Pfam Phytochrome region 419 592 IPR013515 GO:0006355|GO:0009584
Bva05g01275 1129 MobiDBLite consensus disorder prediction 1 29 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva05g01275 Bva-Chr5 6704518 6706620 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva05g01275 4 1120 Histidine Kinase Gene Family AT4G16250 73.162 0.0 1724
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva05g01275 K12121 - zju:107418995 1954.49
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva05g01275 05 6704518 6706620 Bva05g01275 05 6704518 6706620 ECH