Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva05g01261 ATGGAGAAGTTGGCTGAGATATTACTGGGTTTCGAAAACGTGAAGAAACCGAACTGGGTTGGGCGGAGCAATTGGAGTTCTTCTTGGCTTAGTGAAGACCAGCTGGCCAAGCTGGATAGGCACAGAGGAGACCGCTATGGTAACGACCATGATTCTCCCCACTATCGCCACTCCAGAGGTCCTTCTCGATTCTCCGATGCTCCTTTCAGCTACCACAACAACCGCCGTAGCCCCGGAAACTTCCGCTCCGGCGGCGGCGATAACCGCCGAACTTTTAATAGTCCGCCACATCGTTCTCCTGGCAGTGGCGGCGGGTTCTGGCCACACGGAGGTCCCGGAGGTGGAGATGCGTTAAGTCCAATGAGTGGTGGGAGTCCTGGAGGGTTTGGGTTTAACGATCGTCAGGCAACCCCAGTGGCTGGTCAGAAGAGAGGGTTTCCATTTTCTGGACGCGGAGGTTCACCAGATCGTTTCAGCGGCCGAAGTTTTGCTAAACTTTTTGTTGGATCTGTTCCTCGGACAGCCACTGAGGAAGATATTCGCCCTTTGTTTGAGGAACATGGAACTGTGATAGAGGTTGCTCTgattaaggataaaaaaacAGGACAACAACAAGGTTGTTGTTTCATAAAGTATGCTACCTCCGAAGAAGCTGATCAAGCAATCAGAGCATTGCACAATCAACATACTCTTCCTGGAGGAGTAGGTCCAATCCAAGTGAGATATGCTGATGGTGAACGGGAACGCCTTGGTGCAATGGAGTACAAATTATTTGTGGGCTCTCTGAACAAGCAGGCTACTGTAAATGAAGTTGAGGAAattttctcaaaatatggACGGGTTGAAGATGTTTATCTTATGCGTGATGAAAAGAAGCAAAGCCGTGGATGTGGTTTTGTTAAATACTCCCACAGAGATATGGCACTGGCAGCTATAAATGCTCTTAATGGAATTTATACTATGAGAGGTTGTGATCAACCGTTAACTGTTCGGTTTGCTGATCCTAAGAGACCCCGGCAAGGAGATTCAAGGGTTCCTGCATTTGGAGGTCCTGGATTTGGTCCCAGATTTGAAGCACCAGTCCCCAGATCAGCATCCAATCTTGTTGATCATATGGGTGATGGTATTCCTCCCCCTAATACATGGCATCCAATGCGTCCACCAAATATGGGGCTGCCATCTAGTAATGGGCTTCAAGGCATGGGGCCTCCGTTGCTGCCAAGATCTGGTGACATGGCATTGCCTATGAACGCAGGTGGTCCAATGAGAGGTATCGTAGGCCCCTTAGATGGTCCTTTTCAAGGACAGGCTTTGTCATCTTCGATGTCACAAAAGAGTTTCAACCAGTCTGCGGCACAAATTCCACCAGTTGGCCAACAAATATCACCATCGCAGAGACCTCTTCAATTGCCTCGGGACTTGCCTCCTTCACAGACTGCAATGCCCTACCCCCAGACGCCAGCAACCCTTGCATCAGTTAAGCAGCTTGGCCAGGCTCAACTTCCTTCACCTGCTGGTCCCCCTTCATCATGGCCGGTAGTTGGCAAAATTCCTGCACTGGTGCAGCATCAGCCACTTCAGGAGTCATCATCTCAGTTAGCTCAGATGCTGTCACAACAAACTCAGAACTTACAAGCTAGTTTTCATTCATCTCAGCAGGCTTTCTCCCAGCTTCAGCAACAATTACAGATGATGCAACCATCAAGTCAAGGTTTACCATTACAGCAGAGTGCCGAAGCTATTACAAAGCAgTCCCAGTGGTCTGGAATTGCACCGCAGGCAGTTGCCAGCATTCCTTCAGCTGCACCAACTGCGGAAATGCCTTCTTCCTCATCCGCTGCTACCTCTGCTGCTTCTTCTGTACCTGTGACAAACCATAAtatgtctaatttaaaatgtaattggACAGAGCATATGTCTCCTGATGGCTACAAGTACTACTATAATAGTTTTACCGGTGAAAGTAGGTGGGAGAAACCTCAGGagttaatattatatgaagcACAAAAGCAACAGCAAAGCTCATCTGCTCAGCAGTCCCAGCCTACAATATTATCTGCCCAGCAGGTTCCACAAATTCAACAGGCGCAGCCTCAAGGCCAGACTCAAGCACAGGTTCCCCATCAGCAAGAGATGCAACAGCCTTTATCTAATTCTTACCAGGCTTATGGAGTTGCTGGACATCAAAGTATTCAGGAAGTTGGTTATACACACTTACAGGCATCAGCAAATTCTATGGGTAATCCTACACGTTTTCCGCAGGGGGTTCATGCTACCCAGGAGTGGATGTGGAAAAGCAAGCCAGCAGGAATTTA 2315 0.4743 MEKLAEILLGFENVKKPNWVGRSNWSSSWLSEDQLAKLDRHRGDRYGNDHDSPHYRHSRGPSRFSDAPFSYHNNRRSPGNFRSGGGDNRRTFNSPPHRSPGSGGGFWPHGGPGGGDALSPMSGGSPGGFGFNDRQATPVAGQKRGFPFSGRGGSPDRFSGRSFAKLFVGSVPRTATEEDIRPLFEEHGTVIEVALIKDKKTGQQQGCCFIKYATSEEADQAIRALHNQHTLPGGVGPIQVRYADGERERLGAMEYKLFVGSLNKQATVNEVEEIFSKYGRVEDVYLMRDEKKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADPKRPRQGDSRVPAFGGPGFGPRFEAPVPRSASNLVDHMGDGIPPPNTWHPMRPPNMGLPSSNGLQGMGPPLLPRSGDMALPMNAGGPMRGIVGPLDGPFQGQALSSSMSQKSFNQSAAQIPPVGQQISPSQRPLQLPRDLPPSQTAMPYPQTPATLASVKQLGQAQLPSPAGPPSSWPVVGKIPALVQHQPLQESSSQLAQMLSQQTQNLQASFHSSQQAFSQLQQQLQMMQPSSQGLPLQQSAEAITKQSQWSGIAPQAVASIPSAAPTAEMPSSSSAATSAASSVPVTNHNMSNLKCNWTEHMSPDGYKYYYNSFTGESRWEKPQELILYEAQKQQQSSSAQQSQPTILSAQQVPQIQQAQPQGQTQAQVPHQQEMQQPLSNSYQAYGVAGHQSIQEVGYTHLQASANSMGNPTRFPQGVHATQEWMWKSKPAGI 771
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva05g01261 771 SUPERFAMILY RNA-binding domain, RBD 255 355 IPR035979 GO:0003676
Bva05g01261 771 MobiDBLite consensus disorder prediction 434 467 - -
Bva05g01261 771 SUPERFAMILY WW domain 634 666 IPR036020 GO:0005515
Bva05g01261 771 PANTHER TRANSFORMER-2-RELATED 132 727 - -
Bva05g01261 771 MobiDBLite consensus disorder prediction 41 155 - -
Bva05g01261 771 CDD RRM2_FCA 256 335 IPR034645 -
Bva05g01261 771 MobiDBLite consensus disorder prediction 41 61 - -
Bva05g01261 771 CDD WW 632 662 IPR001202 GO:0005515
Bva05g01261 771 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 255 335 IPR000504 GO:0003723
Bva05g01261 771 MobiDBLite consensus disorder prediction 332 353 - -
Bva05g01261 771 SMART rrm1_1 165 241 IPR000504 GO:0003723
Bva05g01261 771 SMART rrm1_1 256 331 IPR000504 GO:0003723
Bva05g01261 771 ProSiteProfiles WW/rsp5/WWP domain profile. 629 662 IPR001202 GO:0005515
Bva05g01261 771 PANTHER FLOWERING TIME CONTROL PROTEIN FCA ISOFORM X1 132 727 - -
Bva05g01261 771 Pfam WW domain 632 660 IPR001202 GO:0005515
Bva05g01261 771 Gene3D - 629 681 - -
Bva05g01261 771 MobiDBLite consensus disorder prediction 674 714 - -
Bva05g01261 771 MobiDBLite consensus disorder prediction 603 626 - -
Bva05g01261 771 MobiDBLite consensus disorder prediction 67 98 - -
Bva05g01261 771 PRINTS Paraneoplastic encephalomyelitis antigen family signature 316 333 IPR002343 GO:0003723|GO:1990904
Bva05g01261 771 PRINTS Paraneoplastic encephalomyelitis antigen family signature 275 287 IPR002343 GO:0003723|GO:1990904
Bva05g01261 771 PRINTS Paraneoplastic encephalomyelitis antigen family signature 164 179 IPR002343 GO:0003723|GO:1990904
Bva05g01261 771 PRINTS Paraneoplastic encephalomyelitis antigen family signature 260 275 IPR002343 GO:0003723|GO:1990904
Bva05g01261 771 MobiDBLite consensus disorder prediction 428 485 - -
Bva05g01261 771 ProSitePatterns WW/rsp5/WWP domain signature. 635 660 IPR001202 GO:0005515
Bva05g01261 771 SMART ww_5 630 662 IPR001202 GO:0005515
Bva05g01261 771 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 257 323 IPR000504 GO:0003723
Bva05g01261 771 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 166 229 IPR000504 GO:0003723
Bva05g01261 771 Gene3D - 157 252 IPR012677 -
Bva05g01261 771 Gene3D - 253 343 IPR012677 -
Bva05g01261 771 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 164 245 IPR000504 GO:0003723
Bva05g01261 771 MobiDBLite consensus disorder prediction 601 626 - -
Bva05g01261 771 SUPERFAMILY RNA-binding domain, RBD 150 249 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva05g01261 Bva-Chr5 6598921 6610345 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva05g01261 162 341 Eukaryotic Initiation Factors Gene Family AT1G71770 26.020 6.71e-14 73.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva05g01261 - - gmx:100786792 818.92
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva05g01261 05 6598921 6610345 Bva05g01261 05 6598921 6610345 ECH