Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva05g01238 ATGGAcgtaaaagaaagaggaagcaGCAACAACAACACCATCCAAAGCGACGACGAGATGGACCTCCGGCGAGGCCCGTGGACCGTCGATGAGGACCTCACCCTCATCAATTACATTGCCAATCACGGCGAAGGCCGCTGGAACAATCTTGCTCGCTCTGCCGGCCTCAAACGAACTGGTAAGAGCTGCAGACTGAGATGGCTCAACTATCTCCGCCCCGATGTTCGACGAGGAAATATCTCCCTAGAAGAGCAACTCCTAATTCTTGAGCTCCATTCTCGCTGGGGAAACAGATGGTCCAAAATTGCCCAGTACTTGCCTGGAAGAACTGACAACGAGATCAAGAACTATTGGAGGACCCGTGTTCAAAAGCATGCCAAACAGTTGAAATGTGACGTGAACAGCAAGCAATTCAAGGACACCATGCGTTATATTTGGATGCCGAGGCTGGTGGAGCGGATTCAAGCCGCTGCGGCTGCTGCCGCCGCCCCTGCTACAACGGCCACCGCGACTGTGGGTTCACCGACATTATCTACCACCACCACCGTCACTGCCAACACCGCATACAATTATGAAAACAACTTGAATGATaacaacaattttgagatacACAATGGGAACATGCCGTTTGGGGGATCCAACGTCACACAAAGTTACACTCCAGAGAATAGCAGCACGGCTGCTTCATCGGACTCGTTTGGGACTCAGGTTTCACCTGTCTCGGATTTGTCGGAATATTACAGTGTCCCGGTTAGTAACCACAATAACACTAACCCGGATTACTATCAGCCCGCTCAAGTAAGCTACTCGGACTGCATCACCAGCCCCGCTGGGTTTTTCTCTGGTGGAGTGGATTTCCAATCCATGGAGCCAAACAACCAGTGGATTCAGAGTGGGGCCACATCGGACAATTTCTGGAATGCTGAGAACATGTTATTCTA 941 0.4931 MDVKERGSSNNNTIQSDDEMDLRRGPWTVDEDLTLINYIANHGEGRWNNLARSAGLKRTGKSCRLRWLNYLRPDVRRGNISLEEQLLILELHSRWGNRWSKIAQYLPGRTDNEIKNYWRTRVQKHAKQLKCDVNSKQFKDTMRYIWMPRLVERIQAAAAAAAAPATTATATVGSPTLSTTTTVTANTAYNYENNLNDNNNFEIHNGNMPFGGSNVTQSYTPENSSTAASSDSFGTQVSPVSDLSEYYSVPVSNHNNTNPDYYQPAQVSYSDCITSPAGFFSGGVDFQSMEPNNQWIQSGATSDNFWNAENMLF 313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva05g01238 313 Pfam Myb-like DNA-binding domain 77 120 IPR001005 -
Bva05g01238 313 Pfam Myb-like DNA-binding domain 24 71 IPR001005 -
Bva05g01238 313 SUPERFAMILY Homeodomain-like 21 118 IPR009057 -
Bva05g01238 313 ProSiteProfiles Myb-like domain profile. 19 71 IPR001005 -
Bva05g01238 313 MobiDBLite consensus disorder prediction 1 20 - -
Bva05g01238 313 Gene3D - 80 144 - -
Bva05g01238 313 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 76 126 IPR017930 -
Bva05g01238 313 MobiDBLite consensus disorder prediction 1 16 - -
Bva05g01238 313 ProSiteProfiles Myb-like domain profile. 72 122 IPR001005 -
Bva05g01238 313 SMART sant 76 124 IPR001005 -
Bva05g01238 313 SMART sant 23 73 IPR001005 -
Bva05g01238 313 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 1 313 IPR044676 GO:0003700|GO:0006355|GO:0043565
Bva05g01238 313 MobiDBLite consensus disorder prediction 212 236 - -
Bva05g01238 313 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 19 75 IPR017930 -
Bva05g01238 313 CDD SANT 26 71 IPR001005 -
Bva05g01238 313 Gene3D - 21 77 - -
Bva05g01238 313 PANTHER MYB TRANSCRIPTION FACTOR 1 313 - -
Bva05g01238 313 CDD SANT 97 120 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva05g01238 Bva-Chr5 6490533 6492465 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva05g01238 1 307 MYB Transcription Factor Family AT3G06490 56.173 7.20e-94 280
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Bva05g01238 Myb_DNA-binding 7e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva05g01238 K09422 - gmx:100791349 425.246
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva05g01238 05 6490533 6492465 Bva05g01238 05 6490533 6492465 ECH