Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva05g01226 aTGACAACGGCAGAGGCAGCTCCAGCTGCCCTTGGTCCTCGATATGCACCTGATGATCCCACACTTCCAAAGCCTTGGAAGGGTTTGATTGATGGAAGTACTGGTGTGTTATACTATTGGAATCCTGAAACCAACATAACCCAATATGAAAAACCTGCAACATTGCCCCCACCCTTGCCTGTAGGTCCTGCTCCTGCGGCTTCTATGCCCAAGCTGGCTCCTATACCGGCGGGTCATTCAACGCCACCTAGTGGGATGGTGGCACAACAATTCCTGCAGGACTCACAATTTCAGGGACAGCAAGTGAACCACCAACCTCAACAGCAGAGTCCCCTGCTAGCACAAGTCACTCAGCAACAGCAGTCTTCTCACGTGGCACAAGCTGCTGGACAGCAACAAAATACACAATCGGTTCAGGCCATGCCACAGCCTGGGTTGCAGCAAGTTAGACAGCCAATAGTGCAGCCCCAGGGTCAGCAAATGGCACAACCTTCAAGCCTGCAAATGCCTCATCAGATGCCACAACAAGTTATCCAGTCCCAACATTTTGGGCAAGGAACAAGTCAGGATCATGGATCACATATGGGGCAGCCATTCCCTCATCAtaactttcattttatgtCATATCAGCAAAATCCCCAGCAGTCTCAACAAAATATGCACAGTCAGCCATTTGAAAATCAGCAAGAGTTAAAACCAGCAATCCCGAAGATAGAGGAAGGGGATTTTAAAAATGCTAGTCAAGTTGGACTTTCACCACACCAATATCAACCAAAGGGCGTCATGTCTGTTCAAAACAATCAGAATGTTCCTGCTGGAATCAGTTCTTTGCAGGTGCCACAAGTGGGTGTTAATGCTGGCCAGCACCAACAGTTTGGTGGCATATCTAGCAATGTGCAACAGTCTCCATCTGCAATGCAGCCACAGCAGGGTAGTTCTGATTCTGTTTACCATCATGGCCCTAACTTCCAAAACCATATGGGCTCTGGAGTGATGCTTGGCCAGCCATCCAAAATTCCCCCAGTTGGCCTAAAGACAGGACATGATGACAATTTACGTGGTAGAGCTGGGAATGAATATTACTATAACCTTAGCAAAGAGATGCCAGCAATGGGTCCTCAGCAGCCAAATATTGCACCAATACCCATTTCAAGAAATCAGcagAACATGAGGATTGGTAATGCCCCTTTCCCAAATGCCATACCTGGTGAAAATGGTTTAAGTGGTATCCAGGGGCATGCATTGCATAACATGTTCAGTCCTCCAATAGGAGTACCTCCGCCACTCTCAAGCAACTCGTTAATTAGGCCACCTTATATGAGATCATCAGATGTTACTGATCTCTCACCTACTGAAATTTACCGTCAGCAACATGAAGTTACCGCAACgGGAGATAATGTTCCACCACCATTTATGACATTTGATGCTGCAGGTTTCCCTCCAGAGATTTTGAGAGAGTTGCCTCAAGTTGCTTCAATGTATTCTGCTGGCTTCTCATCTCCAACACCAATCCAGGCTCAAACATGGCCTGTTGCACTACAGGGCAGGGACATAGTGGCAATTGCCAAAACAGGCTCTGGAAAAACATTGGGATATTTAATCCCTGCATTCATTCTTCTCAGACAACGGCACAATAATCCTCTGAAAGGGCCAACAGTCTTGGTTTTGGCTCCAACACGTGAACTTGCAACACAGATCCAGGATGAGGCCATTAAATTTGGCCGATCTTCACGTGTCTCTTGCACGtGCTTGTATGGTGGAGCACCCAAAGCACTTCAGCTAAAGGAGTTAGACCGTGGACCAGACATTGTTGTTGCCACACCTGGTCGACTCAATGATAtacttgaaatgaagaaaattgattttaggCAAGTTTCACTTCTTGTGCTTGATGAGGCTGACCGAATGCTTGATATGGGTTTTGAGCCTCAAATCCGTAAGATTGTGAATGAAATACCGCCACGCAGACAAACTCTTATGTACACAGCAACCTGGCCAAAAGAAGTAAGAAAAATTGCCGGCGATCTTCTTGTTAATCCTGTCCAGGTTAACATTGGAAGTGTCGATGAGCTTGCTGCAAATAAAGCTATCACCCAGTATGTTGAAGTTGTCACACAAATGGAGAAAGACAGGCGTTTGGAGCAGATCCTCAGATCTCAAGAACGAGGTTCCAAGGTCATAATATTTTGTTCCACGAAGAGGTTATGCGATCAACTTGCTCGTAGCATCGGTCGCAATTTTGGGGCTGCTGCAATTCATGGAGATAAGTCTCAAAGTGAGAGAGATTGGGTCTTAAATCAATTCCGAACAGGGAAGTCACCAATTCTGGTTGCCACTGATGTTGCTGCACGTGGACTTGACATTAAGGATATAAGGGTGGTTATCAACTATGATTTCCCCACAGGGATTGAGGACTATGTACACCGAATTGGACGAACTGGAAGGGCTGGTGCTACTGGACTGTCGTACACCTTTTTCTCTGAGCAGGATTGGAAACATGCAGGTGACTTGATCAAAGTTCTGGAGGGTGCTAACCAGCATGTTCCTCCAGAATTACGACAGATGACTTTGCGTGGACCATCAAACTTTGCAAAGGATCGTAGTGGGATGAATCGCTTTGATTCGGGCGGGCCAGTTGCTGGCCGCTGGGATTCTGGCGGTCGTGGTGGCACTAGGGATGGCGGGTTCAGTGGTCGTGGTGGCATGAGAGATGGAGGGTTAGGTGGTCGTGTTGGCATGAGGGATGGCGGCTTCGGTGGTCGGGGTGGCATGAGGGATGGGGGATTTGGTGGTCGCGGTGGCATGAGGGATGGTGCCAGTGTGCATGGGGGGAGaggtgatttcttttctggTAGAGGCAACAGGGGTCGGGGTTTTGGTGGCCCTCGAGGGGGCCGTGTTGGTTGGGGTCGAAGTGAACGTGGCCCACATGATCGGTACAACATGGAAGGGCGAGGGCGTGGACGTGGAAGATTTGATAATAGAAGAGATATAGCTCCCAGGAGTAGAGGAAGAAGTTATAGTCGTAGCCCTGAAAGAGTTCGTACTTGGGATTATAGCAGTAGTCCTAGTAGAAGTCGAAGTAGAAGTAGGAGTAGGAGTTGGAGCAGGGGTCGCAGCCGAAGCCGCAGTTGGTCCCGTGGTCATAGTCGAAGCTATAGCCGGAGCCGGAGCCGCAGTCATGGCCGTAGAAGTCGAAGTTACAGCCGCAGTCGTAGCCGCAGCTATGATAGACGTGATAGGTCAGATGAACGGACCTGTGATCAGGATACCAGGGCGTCTGAAGTTGAAGCTTCTGAGCCAAGAACGTCTCCAACCACGCAAGGTGATTCAATTTTGGGAAACAAACTTGGCGAGCAGCCACCAGTTGTTGGGGGTGCTGAGCCAGTGAATCCAGAGGCTGCTGCCGACCCTCACCATCAATCAGCTTCTGACATTTG 3440 0.4805 MTTAEAAPAALGPRYAPDDPTLPKPWKGLIDGSTGVLYYWNPETNITQYEKPATLPPPLPVGPAPAASMPKLAPIPAGHSTPPSGMVAQQFLQDSQFQGQQVNHQPQQQSPLLAQVTQQQQSSHVAQAAGQQQNTQSVQAMPQPGLQQVRQPIVQPQGQQMAQPSSLQMPHQMPQQVIQSQHFGQGTSQDHGSHMGQPFPHHNFHFMSYQQNPQQSQQNMHSQPFENQQELKPAIPKIEEGDFKNASQVGLSPHQYQPKGVMSVQNNQNVPAGISSLQVPQVGVNAGQHQQFGGISSNVQQSPSAMQPQQGSSDSVYHHGPNFQNHMGSGVMLGQPSKIPPVGLKTGHDDNLRGRAGNEYYYNLSKEMPAMGPQQPNIAPIPISRNQQNMRIGNAPFPNAIPGENGLSGIQGHALHNMFSPPIGVPPPLSSNSLIRPPYMRSSDVTDLSPTEIYRQQHEVTATGDNVPPPFMTFDAAGFPPEILREMYSAGFSSPTPIQAQTWPVALQGRDIVAIAKTGSGKTLGYLIPAFILLRQRHNNPLKGPTVLVLAPTRELATQIQDEAIKFGRSSRVSCTCLYGGAPKALQLKELDRGPDIVVATPGRLNDILEMKKIDFRQVSLLVLDEADRMLDMGFEPQIRKIVNEIPPRRQTLMYTATWPKEVRKIAGDLLVNPVQVNIGSVDELAANKAITQYVEVVTQMEKDRRLEQILRSQERGSKVIIFCSTKRLCDQLARSIGRNFGAAAIHGDKSQSERDWVLNQFRTGKSPILVATDVAARGLDIKDIRVVINYDFPTGIEDYVHRIGRTGRAGATGLSYTFFSEQDWKHAGDLIKVLEGANQHVPPELRQMTLRGPSNFAKDRSGMNRFDSGGPVAGRWDSGGRGGTRDGGFSGRGGMRDGGLGGRVGMRDGGFGGRGGMRDGGFGGRGGMRDGASVHGGRGDFFSGRGNRGRGFGGPRGGRVGWGRSERGPHDRYNMEGRGRGRGRFDNRRDIAPRSRGRSYSRSPERVRTWDYSSSPSRSRSRSRSRSWSRGRSRSRSWSRGHSRSYSRSRSRSHGRRSRSYSRSRSRSYDRRDRSDERTCDQDTRASEVEASEPRTSPTTQGDSILGNKLGEQPPVVGGAEPVNPEAAADPHHQSASDI 1140
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva05g01226 1140 MobiDBLite consensus disorder prediction 119 139 - -
Bva05g01226 1140 MobiDBLite consensus disorder prediction 60 86 - -
Bva05g01226 1140 SMART ww_5 21 54 IPR001202 GO:0005515
Bva05g01226 1140 MobiDBLite consensus disorder prediction 298 322 - -
Bva05g01226 1140 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 503 677 IPR014001 -
Bva05g01226 1140 CDD SF2_C_DEAD 691 820 - -
Bva05g01226 1140 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 706 850 IPR001650 -
Bva05g01226 1140 SMART ultradead3 491 694 IPR014001 -
Bva05g01226 1140 CDD WW 23 52 IPR001202 GO:0005515
Bva05g01226 1140 MobiDBLite consensus disorder prediction 964 1006 - -
Bva05g01226 1140 ProSiteProfiles WW/rsp5/WWP domain profile. 20 54 IPR001202 GO:0005515
Bva05g01226 1140 Pfam Helicase conserved C-terminal domain 703 811 IPR001650 -
Bva05g01226 1140 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 40 264 951 - -
Bva05g01226 1140 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 543 826 IPR027417 -
Bva05g01226 1140 ProSitePatterns WW/rsp5/WWP domain signature. 26 52 IPR001202 GO:0005515
Bva05g01226 1140 MobiDBLite consensus disorder prediction 1 27 - -
Bva05g01226 1140 Pfam DEAD/DEAH box helicase 496 666 IPR011545 GO:0003676|GO:0005524
Bva05g01226 1140 Gene3D - 682 852 IPR027417 -
Bva05g01226 1140 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 264 951 - -
Bva05g01226 1140 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 472 500 IPR014014 GO:0003724
Bva05g01226 1140 MobiDBLite consensus disorder prediction 857 1140 - -
Bva05g01226 1140 MobiDBLite consensus disorder prediction 1064 1091 - -
Bva05g01226 1140 MobiDBLite consensus disorder prediction 180 194 - -
Bva05g01226 1140 MobiDBLite consensus disorder prediction 298 324 - -
Bva05g01226 1140 Pfam WW domain 22 52 IPR001202 GO:0005515
Bva05g01226 1140 MobiDBLite consensus disorder prediction 1024 1063 - -
Bva05g01226 1140 Gene3D - 447 681 IPR027417 -
Bva05g01226 1140 MobiDBLite consensus disorder prediction 1007 1023 - -
Bva05g01226 1140 SUPERFAMILY WW domain 14 54 IPR036020 GO:0005515
Bva05g01226 1140 MobiDBLite consensus disorder prediction 1092 1108 - -
Bva05g01226 1140 SMART helicmild6 727 811 IPR001650 -
Bva05g01226 1140 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 623 631 IPR000629 -
Bva05g01226 1140 MobiDBLite consensus disorder prediction 180 203 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva05g01226 Bva-Chr5 6381637 6382836 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva05g01226 460 858 Eukaryotic Initiation Factors Gene Family AT3G19760 33.500 2.43e-66 228
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva05g01226 K12823 - gmx:100807830 1358.58
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva05g01226 05 6381637 6382836 Bva05g01226 05 6381637 6382836 ECH