Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva05g01213 ATGGACGCTAAATTTTGGGGGAAGAATCAGTATGTCTATGGACCTGTGGTACCAGAAATGAGGGCAGCTGGGAAGAAGAGTTTGGAATGGGATTTGAATGACTGGAAATGGGACGGTGATCTTTTTACTGCTAGTCCACTAAATTCAACTCCATCAGATTGTAGGAGTCGGCAGTTGTTCCCAGTTAATCCAGAAACTCCAGCAAAAGCTAATATATCTAACAGTTTGTCTTCTGGATCGGATAATAGCAACCCAGGGaacagaaagagagaattggAAAAAAGGAGCAGAGACGTTATGGGGGAAGAGGAAGAGCTGAATGATGAAGCTGGTTCACTTAATTTAAACCTTGGGCGTCAAATTTACCCTATCATGGAAGGGGATGTGAAGAGTGGGAAGAAGACAAAGATAGTTGGGACTGCATCAAACCGTGCGGTTTGTCAGGTGGAAGATTGTAGGGCTGATCTCACCAATGCAAAGGATTACCATCGACGACACAAGGTCTGTGATATGCATTCTAAGGCAACAAAGGCATGGGTGGGAAATGTTATGCAGCGTTTCTGTCAGCAGTGTAGCAGATTTCATGTTCTTCAAGAATTTGATGAAGGGAAGAGAAGTTGTCGTAGGCGTCTAGCAGGCCACAATAGGAGGAGGAGAAAAACGCATCCTGATACTGTAGTAAATGGGAGCTACTTGAATGATGAAAGAGGCAGTAGCTATCTTTTAAGGAGTCTGCTTCGGATTCTGTCCAACATGCACTCAAATGGCTCAGATAACAGAAGGGACCAGGACATTGTGTCGCATCTGCTAAGGAACCTGGCTAGTCTAGCTGGTACGGttaatgaaagaaatataGCCTCATTATTGGAGGGATCTCAAGGTCTGCTGAGTGCTGGGACATCTGGTGCTGCACAAGATGTTCCCAATATGAATTCAAATGGTCTTGAACCCTCCAGGCCACCAGGTTCAACAATTAAGACAGATGGTGGTCTCATTCCTCAGGCCTTTCCAAATTGTACGGGGCAGAGTGTGACAGTGCCTGCTTATGATAAGACACAAAAATGCATAACATCAAGCAATGGTGGGAAAGGAAGCTTAAATTCTCCTTCTGGACAACAGCCTTCCAATGTGATTCTGCCAAAGGATGGGCTTCCACCACAATTAGTTGCAACAGAGACTAGAGTTGGAAGGAATGGCTTAAATAACATTGACCTGAATAATGTTTGTGATGATATACAGGATGATGTAGAGAACCCAGGGAAGTCTCATGCTCTTGTAGCTTCAGGGATTGGGTCTCTTGGTCATCCTTCATGGTTATCTGACTCTCGCAAGTCCAGTCCACCTCAGACAAGTAGAAACTCAGATTCAACGTCTACCCAATCACCATCTAGTTCTAGTGGAGAGGCTCAGAGTCGCACAGATAGAATTGTTTTTAAGCTCTTCGGGAAGGATCCAAATGATTTCCCCATTGTTCTCCGATCACAGATCCTCAACTGGTTATCCCACAGTCCCACAGAGATTGAGAGCTATATAAGGCCGGGttgtataatattaacaaTATATCTCCGCCTAGAAAAATCTGAGTGGGAGGAGCTCTGCTGTAACCTAGGGCCCAGGTTGAAAACTCTTGCCGCATCAAATGACTCTTTCTGGAGAACAGGATGGGTATACACAAGGGTGCGGCACTCTGTTGCTTTTCTATACAATGGTCAGGTAGTCTTGGATGTGCCCTTGCACCTCAAAAGCCCCAAAAAGTGCAGGATTTCATGCATTAAACCACTTGCTGTTTCTGCAACTGCAAGTGCTCAGTTTATTGTGAAAGGGTTCAGCCTTTTTGGGTCTAGCACAAGGTTGCTCTGTGCACTTGAAGGGAAGTATCTTGTACAGGACAGTTGTTATGACTTGATTGATGGTGTTGATGCAGCTATGGACAATGATGAGCTTCAGTGCCTCAGATTCTCATGCCATATACCAAAAGTGACAGGGAGAGGATTCATTGAGGTGGACGATCATGGTCTTAGCAGCTCTTCCTTTCCATTTATAGTTGCGGAGCAAGAACTTTGTTTAGAGATCTGTAAACTGGAGAGTGTGATTGAGGCAGCTAATACTGTTGATgacattgaaataaaaaacaaacaaattgaagaaaagagTAAAGCCTTGAATTTCATACAAGAAATGGGTTGGCTCCTTCATAGAAGTCATATGAAAGTTCGATTAGGTCCCATGGCACCTGTCCAGGATCTTTTCCCAATCAACCGGTTCTTATGGCTAGTTGACTTCTCCATGGACCATGATTGGTGTGCCGTAATGAAAAAACTCATGGAGGTTATGTTTGACGGTACTGTTGATGCAGGAGAGCATACCTCCAAAGAGCTTGCATTGTTAGATATGGGTCTATTGCACAGAGCTGTGAAGAGAAATTGCAGGTCTATGGTGGAACTACTGTTAAAATTTGTACCTGTTAAAACTTCAGATGACACAGACAGTGAGGAGAAACAAGTTGACAAGACCACAGATAGGTTCTTATTTAGACCTGACGCTGTTGGGCCTGCTGGGTTGACTCCACTTCATGTTGCAGCAAGTATGAATGGCTCAGAGAATGTCTTAGATGCCTTAACTGACGATCCATTAATGGTGGGAATTGAGGCTTGGAAAAGTGCTCGCGATGATACCGGCAGTATTATGGAGAAAAAGAGCCAGCACAAGCATTCAGGTGGCCATAGGTCATCTAAAGTTTCAAGCTTGCAGACTGAGAAGATTGAAAGGCAGGCAATGCCATTATTGCGTGGTTGCGAGCTATGCCAGCGAAAGCTGGCTTATGGCGGCACGAGAACTGCTCTGGTTTACAGGCCAGCAATGCTGTCAATGGTGGCCATTGCAGCCGTGTGTGTCTGTGCGGCTTTGCTCTTTAAAAGCTCACCAAGAGTGTACTATGTATTCCAGCCCTTCACATGGGAAAAATTGAAGTATGGTTCCAGCTA 2984 0.4377 MDAKFWGKNQYVYGPVVPEMRAAGKKSLEWDLNDWKWDGDLFTASPLNSTPSDCRSRQLFPVNPETPAKANISNSLSSGSDNSNPGNRKRELEKRSRDVMGEEEELNDEAGSLNLNLGRQIYPIMEGDVKSGKKTKIVGTASNRAVCQVEDCRADLTNAKDYHRRHKVCDMHSKATKAWVGNVMQRFCQQCSRFHVLQEFDEGKRSCRRRLAGHNRRRRKTHPDTVVNGSYLNDERGSSYLLRSLLRILSNMHSNGSDNRRDQDIVSHLLRNLASLAGTVNERNIASLLEGSQGLLSAGTSGAAQDVPNMNSNGLEPSRPPGSTIKTDGGLIPQAFPNCTGQSVTVPAYDKTQKCITSSNGGKGSLNSPSGQQPSNVILPKDGLPPQLVATETRVGRNGLNNIDLNNVCDDIQDDVENPGKSHALVASGIGSLGHPSWLSDSRKSSPPQTSRNSDSTSTQSPSSSSGEAQSRTDRIVFKLFGKDPNDFPIVLRSQILNWLSHSPTEIESYIRPGCIILTIYLRLEKSEWEELCCNLGPRLKTLAASNDSFWRTGWVYTRVRHSVAFLYNGQVVLDVPLHLKSPKKCRISCIKPLAVSATASAQFIVKGFSLFGSSTRLLCALEGKYLVQDSCYDLIDGVDAAMDNDELQCLRFSCHIPKVTGRGFIEVDDHGLSSSSFPFIVAEQELCLEICKLESVIEAANTVDDIEIKNKQIEEKSKALNFIQEMGWLLHRSHMKVRLGPMAPVQDLFPINRFLWLVDFSMDHDWCAVMKKLMEVMFDGTVDAGEHTSKELALLDMGLLHRAVKRNCRSMVELLLKFVPVKTSDDTDSEEKQVDKTTDRFLFRPDAVGPAGLTPLHVAASMNGSENVLDALTDDPLMVGIEAWKSARDDTGSIMEKKSQHKHSGGHRSSKVSSLQTEKIERQAMPLLRGCELCQRKLAYGGTRTALVYRPAMLSMVAIAAVCVCAALLFKSSPRVYYVFQPFTWEKLKYGSS 994
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva05g01213 994 Coils Coil 89 109 - -
Bva05g01213 994 MobiDBLite consensus disorder prediction 67 85 - -
Bva05g01213 994 Coils Coil 697 717 - -
Bva05g01213 994 MobiDBLite consensus disorder prediction 893 917 - -
Bva05g01213 994 MobiDBLite consensus disorder prediction 438 471 - -
Bva05g01213 994 ProSiteProfiles Zinc finger SBP-type profile. 144 221 IPR004333 GO:0003677
Bva05g01213 994 SUPERFAMILY SBT domain 145 227 IPR036893 GO:0003677|GO:0005634
Bva05g01213 994 MobiDBLite consensus disorder prediction 436 471 - -
Bva05g01213 994 MobiDBLite consensus disorder prediction 86 102 - -
Bva05g01213 994 PANTHER TRANSCRIPTION FACTOR SBP FAMILY-RELATED 893 993 - -
Bva05g01213 994 PANTHER TRANSCRIPTION FACTOR SBP FAMILY-RELATED 13 894 - -
Bva05g01213 994 MobiDBLite consensus disorder prediction 46 107 - -
Bva05g01213 994 Pfam SBP domain 147 220 IPR004333 GO:0003677
Bva05g01213 994 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 893 993 IPR044817 GO:0003677
Bva05g01213 994 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 13 894 IPR044817 GO:0003677
Bva05g01213 994 MobiDBLite consensus disorder prediction 359 384 - -
Bva05g01213 994 MobiDBLite consensus disorder prediction 359 377 - -
Bva05g01213 994 Gene3D - 138 208 IPR036893 GO:0003677|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva05g01213 Bva-Chr5 6310067 6316323 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva05g01213 19 994 SBP-box Gene Family AT3G60030 45.152 0.0 743
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Bva05g01213 SBP 1.1e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva05g01213 - - gmx:100776125 1421.76
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva05g01213 05 6310067 6316323 Bva06g00398 06 5068731 5070275 BWGD
Bva05g01213 05 6310067 6316323 Bva05g01213 05 6310067 6316323 ECH