Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva05g01205 ATGGCTTCCAAGGCGCTTGTAGGAGTCTCCATTATTCTTGTGGTGGGTGTAGTTATTGGCCTCATTGCTGGTGTAACCCGCAGCGGTGACGGGTCTGAAGCACAGGTTTCCACAACCACAAGAAATGTTGTTGCAATGTGCAACTCAACAGATTACAAGCAACAATGTGTTCAAAGTATGAGCAGTGTGGCAGACAATAAAAATGCCACGGTCAAGGACTACATCCAAGCTGCAATTGACTACACCATTACAGAGGTTCAAGAAGCAATGAAAAAATCTCAAGGCCTAGGCAAGGATGGGTTGAACTCAACAGATAAAATGGGGTTGGAGGATTGCAAGGACTTATTGGAATACGCCATTGATGAGCTGCAAGCATCGTTTTCAATGGTGGGTGATAGCAAATTGCATACCTTGGCTGATAGAGAAGCAGAACTCAAAAATTGGCTAAGTGCTGTGATATCATACCAGCAAACATGCCTTGATGGGGTGGAGAAAGCTGATGTAAAACAAGAATTGAACAATGGGCTTCTCAATGCCACTGAGCTAACAAGTAATGCCTTGGCCATTGTTTCTGCTATGTCTGAAATCATGTCCTCTTTTAATATCACATCGCCCATCAATATCAGCGCCACGTCGCGAAGGCTGCTGGAATCAGAGGGGAGCAAAGGGGAATTCCCTTCATGGGTATCAGCTTCTGATAGGAAGCTATTGCAAACCAGTACTAGAATGCAGCCTAATGCAGTGGTGGCAAAAGATGGAAGTGGACAATATGATACTATTACTGCGGCTCTTGCAGCATACCCCAAGAAACACACAGGGAGATATGTTATTTATGTGAAAGCTGGTGTGTATGATGAGTACATCACTGTCACAAAGAAGCAAATCAATGTGTTTGTCTATGGAGATGGGCCTGATAAAACCATAGTCACAGGAAGCAAAAGCTACACAGGCGGTGTCTCCACTTTTAGGACTGCTCCCTTTGCTGTTGTTGGTTCTGGTTTCATGGCCAAGGACATGGGATTCAGGAACACAGCAGGGCCAGAAGGACACCAAGCCGTGGCACTTCGAGTTCAAGCAGATAGATCATCCTTCTATAACTGCAGAATGGAAGCTTACCAAGACACATTATATGTCCAAGCACATCGTCAATTCTACCGCAACTGTGTCGTCATGGGCACCGTAGACTTCATCTTTGGAGATGCCACAGCAGTGATCCAAAACTCTCAGTTAATTGTCAGAAAGCCAATGCCAAAGCAGCAAAACATGGTCACAGCTCATGGTAGATTGGACAGACGTGAAACTACTGGTCTTGTTATCCAGAATTGCAAGATTATCCCTGATCAAGCACTCATACCCACAAAGTTGGAGACAAGATCTTACTTGGGCAGACCATGGAAGCCTTATTCAAGGACTATTATAATGGAAAGTTTCATTGATGAGTTTATTCAACCTCAAGGCTGGATGCCATGGAGAGACACTCTCTATCTTGACACATTAGATTATAGAGAGTATTCAAACCGCGGTCCTGGCGCTGCAACTGATAAAAGGGTCACCTGGAAGGGTTACCATGTCATAAAAGATACAAATGAGGCAACACAATTCACCCCTGGGCCTTTTCTGCAAGCAGCTGACTGGCTACCTGCAACTGGTGTACCAAATTACCTTGGCTTCACTAATCCTAAGGATATGCTGTG 1694 0.4475 MASKALVGVSIILVVGVVIGLIAGVTRSGDGSEAQVSTTTRNVVAMCNSTDYKQQCVQSMSSVADNKNATVKDYIQAAIDYTITEVQEAMKKSQGLGKDGLNSTDKMGLEDCKDLLEYAIDELQASFSMVGDSKLHTLADREAELKNWLSAVISYQQTCLDGVEKADVKQELNNGLLNATELTSNALAIVSAMSEIMSSFNITSPINISATSRRLLESEGSKGEFPSWVSASDRKLLQTSTRMQPNAVVAKDGSGQYDTITAALAAYPKKHTGRYVIYVKAGVYDEYITVTKKQINVFVYGDGPDKTIVTGSKSYTGGVSTFRTAPFAVVGSGFMAKDMGFRNTAGPEGHQAVALRVQADRSSFYNCRMEAYQDTLYVQAHRQFYRNCVVMGTVDFIFGDATAVIQNSQLIVRKPMPKQQNMVTAHGRLDRRETTGLVIQNCKIIPDQALIPTKLETRSYLGRPWKPYSRTIIMESFIDEFIQPQGWMPWRDTLYLDTLDYREYSNRGPGAATDKRVTWKGYHVIKDTNEATQFTPGPFLQAADWLPATGVPNYLGFTNPKDML 564
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva05g01205 564 PANTHER PECTINESTERASE 4 557 - -
Bva05g01205 564 SUPERFAMILY Pectin lyase-like 242 554 IPR011050 -
Bva05g01205 564 CDD PMEI-like_3 45 194 - -
Bva05g01205 564 Pfam Pectinesterase 246 542 IPR000070 GO:0030599|GO:0042545
Bva05g01205 564 Gene3D - 240 557 IPR012334 -
Bva05g01205 564 PANTHER PECTINESTERASE 4 557 - -
Bva05g01205 564 TIGRFAM PME_inhib: pectinesterase inhibitor domain 36 191 IPR006501 GO:0004857
Bva05g01205 564 ProSitePatterns Pectinesterase signature 2. 390 399 IPR033131 -
Bva05g01205 564 SMART PMEI_2 38 189 IPR006501 GO:0004857
Bva05g01205 564 Gene3D Invertase/pectin methylesterase inhibitor family protein 41 194 IPR035513 -
Bva05g01205 564 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 44 194 IPR035513 -
Bva05g01205 564 Pfam Plant invertase/pectin methylesterase inhibitor 43 189 IPR006501 GO:0004857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva05g01205 Bva-Chr5 6259272 6261388 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva05g01205 6 557 Carbohydrate Esterase AT3G05610 43.772 4.23e-170 496
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva05g01205 K01051 - egr:104417569 714.146
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva05g01205 05 6259272 6261388 Bva05g01205 05 6259272 6261388 ECH