Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva05g01200 ATGGCAGGGGAGAATGGCACATCTGACACGGCAGGGCCGAGCCAGCAACCAGTTATTGACAGCAAACAAGATTCAGAGAAGGGAAAGAGCAAAGATGAAAGCAAAAACACAGTACCCTTTTACAAGCTCTTCACTTTTGCAGATTCTGTTGATCGTTTATTGATGACTCTAGGGACTGTTGGTGCTACTGCCAATGGAGTCGCCATGCCCTTAATGATTGTAATTATGGGAGACTTAATTGATGCTTTTGGACAAAACTCAGATCAAACAGTTGTTGATGAAGTTTCAAAGGTGGCTCTGAGGTTTGTGTACTTGGCTGTGGGTACCTTTGCAGTTGCATTTCTCCAGGTGACTTGCTGGATGGTGACTGGGGAGAGACAAGCTGCAAGAATAAGAAGTTTATATCTTAAGACAATTTTGAGGCAAGATATCAGCTTCTTTGATAAGGAGACAAATACAGGGGAGGTTGTTGGAAGGATGTCCGGAGATACTGTCCTTATTCAAGATGCCATGGGTGAAAAGGTTGGACAGTTCATACAGTTAATGGCAACTTTCATAGCAGGATTCGTCATAGCATTCGTCAACGGATGGCTTCTAACCGTTGTCATGTTATCTTCGATTCCACCTGTTGTCTTTGGTGGTGCTTTAATGGCCACTGCTATAGGCAAGACAGCATCGCGTGGACAAGCAGCTTATGCTGCAGCAGCAACTGTAGTAGAGCAGACAATCGGTTCTATTCGAACAGTTGCATCATTTACTGGGGAGAAGCAAGCAGTGactaaatttaatcaatcGTTAATGAAAGCTTACAAGAATACTGTACAAGAGGGGTTCGCTTCAGGTTTCGGTTTAggcttcctttttcttgtgaTTTTCTGCAGTTATGGATTGGCTGTATGGTATGGTGGGAGATTGGTGCTGGATAAAGGATATACAGGAGGGGATGTCATGACTGTAATCTTTTCAGTATTGACTGGTTCCATGTCTCTTGGCCAGGCTTCGCCAAGCCTAACTGCATTTGCTGCAGGAAAAGCTGCTGCATTTAAGATGTTTGAAACGATTGAAAGGCAGCCGGAGATTGACGCTTATGACACAAGTGGTAAACAGCTAGATGATATTCGTGGAGATATAGAACTGAGGGGGGTTTGCTTTAGTTACCCTGCAAGACCAGATGAACCGATATTCAATGGGTTTACTCTTTCAATACCAAGTGGTACTACTGCAGCTTTGGTAGGACAAAGTGGGAGTGGGAAATCAACAGTAATTAGTTTGATAGAGAGATTCTATGATCCACAATCTGGTGAAGTTCTCATTGATGGTGTCAATCTCAAAGAGTTTCAACTGAAATGGATTAGACAGAAAATAGGCCTTGTCAGCCAGGAACCGGTTCTGTTTACTTGTAGCATTAAAGAGAACATTGCCTATGGGAAGGAAGGTGCAACTGATGAAGAAATCAAAGCTGCAGCAGAGCTTGCTAATGCAGCTAAATTCATTGATAAACTTCCTCAGGGTCTAGACACAATGGTTGGTGAGCACGGAACTCAGCTCTCTGGGGGTCAAAAGCAAAGAGTTGCAATAGCAAGAGCAATTTTGAAGGATCCAAGAATTCTACTTCTTGATGAAGCTACAAGTGCCCTTGATTCTGAATCTGAGAGAATAGTGCAGGAGGCACTAGACAGAATTATGATCAATCGAACTACAGTTATTGTAGCTCATCGCTTAAGTACTATAAGGAATGCTGATGTTATTGCCGTCATTCACCAAGGGAAAATAGTAGAAAAAGGTTCACATGCTGAGCTGACAAGTGATCCGGAAGGAGCCTATAGCCAGCTCATTAGATTGCAAGAAATTAACAAGttcatgaaaggATTCAGCGCAGATGCAAAGAAAATGTATGAGAAAGCAAGTCAAGTTGCAAATGATGCTGTAGGGAGTATTAGAACAGTTGCTTCCTTCTGTGCTGAAGAGAAAGTGATGGAGTTATACCAGAAGAAATGTGAAGGACCAATTAAGACAGGGATAAGGCAAGGGATCATTAGCGGGATTAGTTTTGgcctttcatttttcttactcTTTTCTGTCTATGCAACCAGTTTCTATGCTGGAGGTAGATTTGTAGAAGATGGTAAAGCGTCAGCCTCAGACGTTTTTCGCGTCTTCTTTGCTCTCACTATGGCTGCTATAGCACTCACTCAATCTAGCTCCTTGGCTCCAGAttcaggaaaaggaaaagcttcTGCTGCATCTATATTTGCTATCCTTGACAGGAAATCAAAAATAGATCCCAGTGATGAATCCGGCATGACATTGGAAAATGTAAAAGGAGAAGTTGAGTTTCACCATGTCAGTTTCAAGTATCCCACTAGACCTGATGTTCAAATATTCAGGAAACTTCGCTTGACCATTCACTCAGGAAAGACAGTGGCTCTGGTTGGAGAAAGTGGAAGTGGAAAGTCTACGGTGATATCATTGTTACAGAGATTTTATGACCCAGATTCAGGTCACATCACACTGGATGGAATGGAAATCCAGAAGCTACAAGTCAAATGGTTAAGGCAGCAAATGGGGTTGGTAAGCCAAGAGCCTGTGTTGTTTAACGACACTATCCGAGCCAATATTGCATATGGAAAGGGTGGGGATGCAACAGAAGCAGAAATTATAGCTGCAGCAGAACTGGCAAATGCTCACAAGTTTATCAGTAGTTTGCAGCATGGCTATGACACTATAGTAGGGGAGCGAGGAGTTCAATTATCTGGAGGACAGAAGCAAAGGGTGGCAATTGCAAGAGCCATTGTGAAGAATCCAAAAATATTGCTACTTGATGAAGCTACCAGTGCCCTTGATGCTGAGTCTGAAAAAGTGGTTCAAGATGCATTGGATAGAGTCATGGTGGACAGAACCACAATTGTGGTAGCCCATAGATTGTCTACTATTAAGGGTGCAGATATGATTGCAGTTGTTAAAAATGGAGTCatagaagagaaaggaaagcatGAAACATTGCTCAAAAAAGGTGGTGCCTATGCTTCCTTGGTAGCTCTTCACACAAGGGCATCTACTTCTTA 3065 0.4137 MAGENGTSDTAGPSQQPVIDSKQDSEKGKSKDESKNTVPFYKLFTFADSVDRLLMTLGTVGATANGVAMPLMIVIMGDLIDAFGQNSDQTVVDEVSKVALRFVYLAVGTFAVAFLQVTCWMVTGERQAARIRSLYLKTILRQDISFFDKETNTGEVVGRMSGDTVLIQDAMGEKVGQFIQLMATFIAGFVIAFVNGWLLTVVMLSSIPPVVFGGALMATAIGKTASRGQAAYAAAATVVEQTIGSIRTVASFTGEKQAVTKFNQSLMKAYKNTVQEGFASGFGLGFLFLVIFCSYGLAVWYGGRLVLDKGYTGGDVMTVIFSVLTGSMSLGQASPSLTAFAAGKAAAFKMFETIERQPEIDAYDTSGKQLDDIRGDIELRGVCFSYPARPDEPIFNGFTLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQSGEVLIDGVNLKEFQLKWIRQKIGLVSQEPVLFTCSIKENIAYGKEGATDEEIKAAAELANAAKFIDKLPQGLDTMVGEHGTQLSGGQKQRVAIARAILKDPRILLLDEATSALDSESERIVQEALDRIMINRTTVIVAHRLSTIRNADVIAVIHQGKIVEKGSHAELTSDPEGAYSQLIRLQEINKFMKGFSADAKKMYEKASQVANDAVGSIRTVASFCAEEKVMELYQKKCEGPIKTGIRQGIISGISFGLSFFLLFSVYATSFYAGGRFVEDGKASASDVFRVFFALTMAAIALTQSSSLAPDSGKGKASAASIFAILDRKSKIDPSDESGMTLENVKGEVEFHHVSFKYPTRPDVQIFRKLRLTIHSGKTVALVGESGSGKSTVISLLQRFYDPDSGHITLDGMEIQKLQVKWLRQQMGLVSQEPVLFNDTIRANIAYGKGGDATEAEIIAAAELANAHKFISSLQHGYDTIVGERGVQLSGGQKQRVAIARAIVKNPKILLLDEATSALDAESEKVVQDALDRVMVDRTTIVVAHRLSTIKGADMIAVVKNGVIEEKGKHETLLKKGGAYASLVALHTRASTS 1021
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva05g01200 1021 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 377 613 IPR003439 GO:0005524
Bva05g01200 1021 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 57 342 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Bva05g01200 1021 PANTHER ATP-DEPENDENT PERMEASE MDL1, MITOCHONDRIAL 4 617 - -
Bva05g01200 1021 CDD ABC_MTABC3_MDL1_MDL2 377 615 - -
Bva05g01200 1021 PANTHER - 4 617 - -
Bva05g01200 1021 Pfam ABC transporter transmembrane region 617 727 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Bva05g01200 1021 Pfam ABC transporter transmembrane region 55 328 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Bva05g01200 1021 Pfam ABC transporter 396 544 IPR003439 GO:0005524
Bva05g01200 1021 SUPERFAMILY ABC transporter transmembrane region 42 361 IPR036640 GO:0005524|GO:0016021
Bva05g01200 1021 Gene3D - 367 616 IPR027417 -
Bva05g01200 1021 Gene3D - 767 1016 IPR027417 -
Bva05g01200 1021 PANTHER - 619 1017 - -
Bva05g01200 1021 MobiDBLite consensus disorder prediction 1 21 - -
Bva05g01200 1021 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 766 1014 IPR027417 -
Bva05g01200 1021 CDD ABC_6TM_Pgp_ABCB1_D1_like 55 338 - -
Bva05g01200 1021 PANTHER ATP-DEPENDENT PERMEASE MDL1, MITOCHONDRIAL 619 1017 - -
Bva05g01200 1021 Gene3D ABC transporter type 1, transmembrane domain 619 1018 IPR036640 GO:0005524|GO:0016021
Bva05g01200 1021 ProSitePatterns ABC transporters family signature. 516 530 IPR017871 GO:0005524
Bva05g01200 1021 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 777 1014 IPR003439 GO:0005524
Bva05g01200 1021 SUPERFAMILY ABC transporter transmembrane region 617 761 IPR036640 GO:0005524|GO:0016021
Bva05g01200 1021 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 369 615 IPR027417 -
Bva05g01200 1021 SMART AAA_5 804 998 IPR003593 -
Bva05g01200 1021 SMART AAA_5 404 576 IPR003593 -
Bva05g01200 1021 ProSitePatterns ABC transporters family signature. 917 931 IPR017871 GO:0005524
Bva05g01200 1021 CDD ABC_MTABC3_MDL1_MDL2 777 1012 - -
Bva05g01200 1021 Gene3D ABC transporter type 1, transmembrane domain 42 366 IPR036640 GO:0005524|GO:0016021
Bva05g01200 1021 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 617 742 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Bva05g01200 1021 Pfam ABC transporter 797 945 IPR003439 GO:0005524
Bva05g01200 1021 MobiDBLite consensus disorder prediction 1 34 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva05g01200 Bva-Chr5 6231984 6237186 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva05g01200 38 616 Calmodulin-binding Proteins AT2G36910 50.859 0.0 594
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva05g01200 K05658 - gmx:100800293 922.539
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva05g01200 05 6231984 6237186 Bva05g01200 05 6231984 6237186 ECH