Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva05g01198 ATGGAACTGGACGACTGGGACTTGAGCGCAGAGGACCTAGATTCCCTGGAAAGAGACGCTTTCCAGAAGATTGCTCAACTTCGTAATCCTTCTTGCTTTTCTTCCTCTGCCACTGCCTCTGCGTCTGTTGCCTCTATTTCGACTCCTTCTGGGAATTATCAGCAATCAAATATACAGCAGCAGCACTCTACGTTACCTCGTAGCAGCCCCTTAGAACGATCCCCTGAAAAACCCATTCCTGATTCTCGCCCTGAAAGAGTTGAAGCTTTGTCTCCTAGGGCCAGAGTATTGCCCACTTCATTAAGTTCAGGAACAAACAAAGATGAACATTCAAAAGAACTGCCAAAGCTTTCAgtcaaattttttcttcattccagCGGAAACATTGCTGCAAGATTTCCATATGACCAGGTTCTAGTATCTGCCTTCCGAAGAATACATAAATCTACTTGGAATGGGAAAGAAAGGTTATGGATGTTCCCACTATATTCTTTGTCATCAGCAGAAAAGGTTCTTGGTGAATTATCTGGTTATAATGTTCAGgtGGAAAACCTAGACCCCTTAGTACATCGGGCCATTACTGCTGCGTCTGCTGTTCCAGATTTACAGGatCGTTATGATAGCATTCCCAGCTATACTGAATCAAAGCTTTTGCCTTTTCAGCGAGAAGGTGTTAGgTTTGTACTGCAGCATGGTGGGCGTGCTCTTGTAGCAGATGAAATGGGTCTGGGGAAAACTTTGCAGgCCATTGCTGTAGCTTCATGTGTTCGTGATTCATGGCCTGTTCTCATTATTACACCATCTTCATTACGTTTGCAATGGGCTTCAATGATTCAACAATGGCTGAATATCCCTTCGTCTGATATACTTGTTGTCTTATCTCAAAGTGGTGGATCAAACAGAGGAGGTTTCACCATAGTATCATCAAATACCAAAAGCAGCATTCGTTTGGACGGGCTATTCAATATCATCTCATATGATGTGGTCACAAAGATACAGAATATGCTAATGGCATTGGACTTTAAGGTTGTGATTGCAGATGAATCACATTATCTGAAAAATGCTCAAGCAAAGAGGACTACTGCTTCTCTTCCAGTTATAAAGAAAGCTCAATATGCAATCTTGCTTAGTGGAACTCCTGCTTTATCCCGACCAATTGAATTATTCAAGCagCTGGAAGCATTGTATCCTGATGTATATAAGAATGTTCATGAATATGGTAATCGGTATTGCAAGGGTGGAATTTTTGGAGTTTATCAAGGTGCAAGTAACCATGAAGAATTACACAATTTGATGAAGGCAACAGTGATGATTCGTAGGCTTAAAAAGGATGTTCTTTCACAACTTCCTGTAAAGCGTAGGCAACAGGTATTCCTAGATTTGGCTGACAAGGATATGAAGCAAATCAATGCTTTATTTCGTGAGttGGAGGTGGTAAAAGCCAAAATTAGCGCGTGcaaatcaaaagaagatgCTGATTCACTGAAGTTTACTCAAAAGAATCTTATCAATAAGATATATACTGATTCCGCAGAAGCTAAGATCCCTGCAGTTCTTGATTATGTTGGAACTGTCATTGAGGCAGGTTGCAAGTTTCTTATATTTGCACATCATCAACCGATGATAGATTCAATACATGAGTTTCTTCTTaagaaaaaagtggGTTGCATCCGGATTGATGGCAGTACACCCGCTGCATCAAGGCAAGCATTGGTTACAGAGTTTCAGGAAAAAGAATCTATTAAGGCAGCAGTGCTGTCTATCAAAGCTGGTGGAGTTGGGATAACTTTAACTGCTGCAAGCACAGTCATCTTTGCAGAATTGTCCTGGACGCCAGGTGATCTCATTCAAGCTGAAGACCGTGCTCACAGAATTGGCCAGGTGTCGTCGGTAAATATCTACTACTTGCTTGCAAATGACACAGTTGATGACATCATATGGGATGTAGTGCAGAgcaaattagaaaatttgggaCAGATGTTAGATGGGCATGAGAAGACGTTGGAGGTTTCAGCTAGCGAGCCACGAAACAGCCCTGCAAAGCAGAAAACACTAGACTCTTTCATCAGAAAATGTAACAAGACGAATGACCAAGAATATCAGTCTGACCCCAAACGCTCCCGCCACTG 2129 0.4063 MELDDWDLSAEDLDSLERDAFQKIAQLRNPSCFSSSATASASVASISTPSGNYQQSNIQQQHSTLPRSSPLERSPEKPIPDSRPERVEALSPRARVLPTSLSSGTNKDEHSKELPKLSVKFFLHSSGNIAARFPYDQVLVSAFRRIHKSTWNGKERLWMFPLYSLSSAEKVLGELSGYNVQVENLDPLVHRAITAASAVPDLQDRYDSIPSYTESKLLPFQREGVRFVLQHGGRALVADEMGLGKTLQAIAVASCVRDSWPVLIITPSSLRLQWASMIQQWLNIPSSDILVVLSQSGGSNRGGFTIVSSNTKSSIRLDGLFNIISYDVVTKIQNMLMALDFKVVIADESHYLKNAQAKRTTASLPVIKKAQYAILLSGTPALSRPIELFKQLEALYPDVYKNVHEYGNRYCKGGIFGVYQGASNHEELHNLMKATVMIRRLKKDVLSQLPVKRRQQVFLDLADKDMKQINALFRELEVVKAKISACKSKEDADSLKFTQKNLINKIYTDSAEAKIPAVLDYVGTVIEAGCKFLIFAHHQPMIDSIHEFLLKKKVGCIRIDGSTPAASRQALVTEFQEKESIKAAVLSIKAGGVGITLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNIYYLLANDTVDDIIWDVVQSKLENLGQMLDGHEKTLEVSASEPRNSPAKQKTLDSFIRKCNKTNDQEYQSDPKRSRH 709
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva05g01198 709 MobiDBLite consensus disorder prediction 672 686 - -
Bva05g01198 709 MobiDBLite consensus disorder prediction 668 687 - -
Bva05g01198 709 PANTHER DNA ANNEALING HELICASE AND ENDONUCLEASE ZRANB3 FAMILY MEMBER 4 699 - -
Bva05g01198 709 MobiDBLite consensus disorder prediction 44 70 - -
Bva05g01198 709 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 518 669 IPR001650 -
Bva05g01198 709 CDD SF2_C_SNF 513 637 - -
Bva05g01198 709 Gene3D - 484 706 IPR027417 -
Bva05g01198 709 ProSiteProfiles HARP domain profile. 113 187 IPR010003 -
Bva05g01198 709 PANTHER SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY A-LIKE PROTEIN 1 4 699 IPR030101 GO:0006281|GO:0031297|GO:0036310
Bva05g01198 709 Pfam SNF2-related domain 235 497 IPR000330 GO:0005524|GO:0140658
Bva05g01198 709 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 213 451 IPR027417 -
Bva05g01198 709 MobiDBLite consensus disorder prediction 74 90 - -
Bva05g01198 709 CDD DEXHc_HARP_SMARCAL1 217 440 - -
Bva05g01198 709 SMART ultradead3 213 406 IPR014001 -
Bva05g01198 709 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 340 669 IPR027417 -
Bva05g01198 709 SMART helicmild6 543 626 IPR001650 -
Bva05g01198 709 Gene3D - 189 464 IPR038718 -
Bva05g01198 709 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 226 398 IPR014001 -
Bva05g01198 709 MobiDBLite consensus disorder prediction 44 111 - -
Bva05g01198 709 Pfam Helicase conserved C-terminal domain 525 626 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva05g01198 Bva-Chr5 6213748 6221625 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva05g01198 497 657 RAD5 or RAD16-like Gene Family AT1G02670 31.515 2.46e-17 84.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Bva05g01198 SNF2_N 1.7e-28 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva05g01198 K14440 - gmx:100797654 1124.38