Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva05g01188 ATGGATTTTGCTGCAGAAGAATTTGATGCCCGCCATACCcactcatcatcttcttcatcatcttcaattGATAGCAGCAATCACCCTTCTGCTATTGCCACACCAgcttcatcatcttcctcaAATGTATGCAGAAATAGCAGAAGCAACAGCATCGGAATGGATTTCAGCACAGACCTCAGACTTGGACTGAGCATCAGCAGCCCACCTTCTTCAAGCTCAATTCCGAGGGAGCAAAGTTTGGATTGGCCACCGATTAAATCAACATTGAGGAGTAGACTTGTTGGGAAAAACAGCCAATTGAGCCAACAACCGTTCTTGTTTGTCAAAGTTTACATGGAAGGGATCCCAATTGGTAGAAAATTGAATCTGTTGGCACATCACAGCTACGATGGTCTAGTAAGAGCTCTTGGCCATATGTTTAAGACCACAATTCTTTgtcCTAATTCTCAACCAATTCATTCTGGGAATTTTCACGTGTTAACTTACGAGGATCAAGAGGGAGATTGGATGATGGTTGGAGATGTGCCATGGGAGATGTTCTTGAACAATGTAAGAAGATTGAAGATCACAAGAGCAGATAGATGCTA 590 0.3932 MDFAAEEFDARHTHSSSSSSSSIDSSNHPSAIATPASSSSSNVCRNSRSNSIGMDFSTDLRLGLSISSPPSSSSIPREQSLDWPPIKSTLRSRLVGKNSQLSQQPFLFVKVYMEGIPIGRKLNLLAHHSYDGLVRALGHMFKTTILCPNSQPIHSGNFHVLTYEDQEGDWMMVGDVPWEMFLNNVRRLKITRADRC 196
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva05g01188 196 MobiDBLite consensus disorder prediction 1 46 - -
Bva05g01188 196 Gene3D - 101 196 - -
Bva05g01188 196 MobiDBLite consensus disorder prediction 14 46 - -
Bva05g01188 196 SUPERFAMILY CAD & PB1 domains 99 190 - -
Bva05g01188 196 Pfam AUX/IAA family 59 192 IPR033389 -
Bva05g01188 196 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 17 196 IPR003311 GO:0005634|GO:0006355
Bva05g01188 196 ProSiteProfiles PB1 domain profile. 106 195 IPR000270 GO:0005515
Bva05g01188 196 PANTHER AUXIN-RESPONSIVE PROTEIN IAA31 17 196 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva05g01188 Bva-Chr5 6165095 6166558 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva05g01188 108 190 B3 DNA Binding Superfamily AT5G37020 42.169 1.10e-10 58.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Bva05g01188 AUX_IAA 2.2e-32 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva05g01188 K14484 - gmx:100818083 247.284
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva05g01188 05 6165095 6166558 Bva05g01188 05 6165095 6166558 ECH