Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva05g01182 ATGTCAATGGAACCTCCTCCTTTCCAAGAGGCTGCGCGATGTGATTTCTGCAATAGCAGTTTCAGCACTTTCCGAAGACGGCATCACTGTAGATGTTGTGGGAGAACACTATGCCATGAGCattcatcaaatcaaatgGCCTTACCACAATTTGGTATTTACTCAAATGTCAGAGTATGTGCTGATTGCTTCAATAATTCGCAATCTGGAAAGGATGTCCCACAGGCTTCTTCAAATGGAGTAAACAGCACgacaaattcaatttctaaacTGAACATTGATGAAAATGTACATTCAGATAATGCATCAACAGTGGAGAATAAGCCTTTGTCAAGCATTAAAGAGTGCAAGTGCGGGATGCCTCTTTGCATTTGTGAAGCGCCAGTCCCTTCCACTGATGCAACCCCCCAGCAGAAGAAATCTACTTCAGTTGTTACACCTCAGTCAAATCCTAAACCAAAGAAGCCAGATACCATAAAAAGTAGAAGCTCCACTTCAAACAGCAAGTTTAGttcTACGTTTAACAATGGTACATCAGACAGACCCCAGTCGGACAATGAAGCTAATGGAGAGGGTTTAAGAGAAGCAATTAAAAATGGTGACATTGCTGCTGTCAAGAAGCTTCTCAATCAGGGTGTAGATGCAAATTACCGGGACAAGCAAGGATTGTCTTTATTACATTTGGCTGCACTCTTCAATCAAACTGATATAGTTTTCATTCTCATGGATTCTGGGGCAAGCCTGGAGTATAAGAATGCACAAGGAGAAACGCCTTTGGATTGTGCTCCAGCTACCTTGCAGTACAAGATGCGAAAGAAGATGGAGGAATCTGGGGCAATGGATCGGAGCAATTG 854 0.4133 MSMEPPPFQEAARCDFCNSSFSTFRRRHHCRCCGRTLCHEHSSNQMALPQFGIYSNVRVCADCFNNSQSGKDVPQASSNGVNSTTNSISKLNIDENVHSDNASTVENKPLSSIKECKCGMPLCICEAPVPSTDATPQQKKSTSVVTPQSNPKPKKPDTIKSRSSTSNSKFSSTFNNGTSDRPQSDNEANGEGLREAIKNGDIAAVKKLLNQGVDANYRDKQGLSLLHLAALFNQTDIVFILMDSGASLEYKNAQGETPLDCAPATLQYKMRKKMEESGAMDRSN 284
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva05g01182 284 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 8 68 IPR017455 -
Bva05g01182 284 ProSiteProfiles Ankyrin repeat profile. 221 253 IPR002110 GO:0005515
Bva05g01182 284 SMART ANK_2a 188 217 IPR002110 GO:0005515
Bva05g01182 284 SMART ANK_2a 221 250 IPR002110 GO:0005515
Bva05g01182 284 Gene3D - 168 270 IPR036770 -
Bva05g01182 284 MobiDBLite consensus disorder prediction 131 186 - -
Bva05g01182 284 ProSiteProfiles Ankyrin repeat profile. 188 220 IPR002110 GO:0005515
Bva05g01182 284 SUPERFAMILY FYVE/PHD zinc finger 8 75 IPR011011 -
Bva05g01182 284 MobiDBLite consensus disorder prediction 131 189 - -
Bva05g01182 284 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 2 70 IPR013083 -
Bva05g01182 284 Pfam Ankyrin repeats (3 copies) 195 262 IPR002110 GO:0005515
Bva05g01182 284 SUPERFAMILY Ankyrin repeat 193 265 IPR036770 -
Bva05g01182 284 PANTHER VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN 27 2 277 - -
Bva05g01182 284 SMART fyve_4 3 69 IPR000306 GO:0046872
Bva05g01182 284 CDD FYVE_scVPS27p_like 7 64 - -
Bva05g01182 284 ProSiteProfiles Ankyrin repeat region circular profile. 221 252 - -
Bva05g01182 284 Pfam FYVE zinc finger 9 68 IPR000306 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva05g01182 Bva-Chr5 6141831 6146170 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva05g01182 200 279 MAP Kinase Kinase Kinase AT3G58760 36.250 1.16e-09 56.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva05g01182 - - gmx:100814367 421.009