Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva05g01181 ATGGGTTTCTATATTGAAGAGTCAATCTCTGGTTTTAGCATAGGCCAGGCAATATATGAAGCAGCTCTTATAATTGCAGTTCTGAGATGGGTTTTGTGTTGGGTTTCCAGAATGATCAAAGATAGAAGGGACAGTTCTCTTGAAACCTCAACtgatctttcttcttcatgggTTTCTTCCCAGATGATAAAAGACAGTACTCTGATTCTGACCACTTTTGGTGAGTTTGTGGAGAGGGTGCCAGAGACAGATGACACTTGTGCTGTGTGCTTGAACCAGCTGAAAATGGAAGATGAAGTTAGGGAACTGACGAATTGCTACCATGTGTTCCATAGGGAATGCATAGACAGATGGTTGGATCATGACCATGACAATCACAGTCCCACTTGTCCACTCTGCAGAGCCCCTCTTATGGCTCCTTGTGCTTCTACAGAAAGCTCCAGCTGCTTGCCTCCCCCTCAGCCCAGCTGGGCTGTGGAGAGACTTCTCTATCTCTTTGGCGATGATCTGCTTCCTTA 518 0.4402 MGFYIEESISGFSIGQAIYEAALIIAVLRWVLCWVSRMIKDRRDSSLETSTDLSSSWVSSQMIKDSTLILTTFGEFVERVPETDDTCAVCLNQLKMEDEVRELTNCYHVFHRECIDRWLDHDHDNHSPTCPLCRAPLMAPCASTESSSCLPPPQPSWAVERLLYLFGDDLLP 172
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva05g01181 172 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 69 140 IPR013083 -
Bva05g01181 172 Pfam Ring finger domain 85 134 IPR001841 -
Bva05g01181 172 SMART ring_2 87 133 IPR001841 -
Bva05g01181 172 SUPERFAMILY RING/U-box 81 140 - -
Bva05g01181 172 ProSiteProfiles Zinc finger RING-type profile. 87 134 IPR001841 -
Bva05g01181 172 PANTHER RING ZINC FINGER PROTEIN-RELATED 1 172 - -
Bva05g01181 172 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 1 172 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva05g01181 Bva-Chr5 6139966 6141201 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva05g01181 1 170 C3H Transcription Factor Family AT5G20885 51.913 1.25e-45 146
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva05g01181 K16281 - gmx:100306203 245.743
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva05g01181 05 6139966 6141201 Bva05g01181 05 6139966 6141201 ECH