Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva05g01176 ATGGCATTCTTGTTTCTGAGGCTGGTTTTCAGTTTTTGCACCCCATTAGCATCAGGTGCTGGTGTTGCTAGCCCTGATTTCGTACAGCCAGAGTGCCTGGAAGTTTCTGCTTCTGAATTTGTTGGCTCTGTGAGGGGAGTGCTTGATGTTTTGCAAAAAGTTATTTCCATTTTGTCTAAGCTCGGTAGCTCTTTTGGCGATTTTCGTGTTTCAAATGCCATTTCTGATTGCCTAGATTTGCTTGACTTGTCTTCCGACGAGCTCAGCTGGACCGCATCTGCTACTCAGAATCCCACTGGCAAGCATAACACCACAGGGAAGTTAAGTTCTGATCTGAGAACATGGTTAAGTGCTGCACTTGCAAATCCAGAGACATGCATGGAGGGATTTGAAGGTGCACCCAACTGCAGACAATCTTCCCACAAAAAGGGCCAATTTCCTTCGTGGGTTAAACCAGGAGATAGAAAGTTGCTGCAAGCCAATGTGGTGGCTGTAGATGTTGTGGTAGCTGCTGATGGCACTGGGAATTTCACTAAGGTAATGGATGCGGTGTTAGCTGCACCAGACTACAGCATGAAACGCTATGTGATATACATAAAACGCGGTGTTTACAAAGAGAATGTGGagatcaagaagaagaagtggaACCTCATGATGATTGGAGATGGCATGGATGCTACTGTTATCTCCGCTGTTAGTGGAAGAGGGTTCATAGCACGAGACCTTTCTTTCCAGAACACCGCAGGTCCCGAGAAACACCAAGCAGTGGCACTGAGATCCGATTCTGACCTCTCTGTCTTCTATCGATGTGGGTTCTTCGGTTACCAAGGTACCCTTTACACTCGCCCCATGCGCCAATTCTACAGAGAATGCAAAATCAGTGGCACTGTGGATTTCATCTATGGCGATTCCACTGCACTTTTCCAAAACTGCAAAATACTTGTCAGAAAAGGCTTACCAAATCAGAAAAACATCATCACAGCACAAGGTCGCAAACACCCAAATGACCCAACGGGTTTCTCCATCCAATTCTGCAACATTACTGCAGACTCTGACCTTCTGCCCTCTGTTAACACCACCCAAACTTACCTTGGCAGGCCCTGGAAGGAATTTTCTCGAACAGTCATCATGCAATCTTATTTGAGCAATGTGTTGAGACCAGAAGGGTGGATAGAGTGGAACGGACCATTTGCTTTAGACACATTGTATTATGCAGAGTACATGAATTATGGACCAGGAGCTGGTTTAGCTGACAGGATCAAATGGCCGGGTTACCATGTGCTTAATAGTTCTAGCGAAGCTAATAACTTTACTGTGGCCCGGTTCATTGAAGGGAATCTATGGTTACCTTCTACAGGTGTGATCTTCACTGCAGGATTGGAGATTTA 1388 0.451 MAFLFLRLVFSFCTPLASGAGVASPDFVQPECLEVSASEFVGSVRGVLDVLQKVISILSKLGSSFGDFRVSNAISDCLDLLDLSSDELSWTASATQNPTGKHNTTGKLSSDLRTWLSAALANPETCMEGFEGAPNCRQSSHKKGQFPSWVKPGDRKLLQANVVAVDVVVAADGTGNFTKVMDAVLAAPDYSMKRYVIYIKRGVYKENVEIKKKKWNLMMIGDGMDATVISAVSGRGFIARDLSFQNTAGPEKHQAVALRSDSDLSVFYRCGFFGYQGTLYTRPMRQFYRECKISGTVDFIYGDSTALFQNCKILVRKGLPNQKNIITAQGRKHPNDPTGFSIQFCNITADSDLLPSVNTTQTYLGRPWKEFSRTVIMQSYLSNVLRPEGWIEWNGPFALDTLYYAEYMNYGPGAGLADRIKWPGYHVLNSSSEANNFTVARFIEGNLWLPSTGVIFTAGLEI 462
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva05g01176 462 Gene3D - 163 462 IPR012334 -
Bva05g01176 462 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 44 135 IPR035513 -
Bva05g01176 462 ProSitePatterns Pectinesterase signature 1. 191 210 IPR018040 -
Bva05g01176 462 Gene3D Invertase/pectin methylesterase inhibitor family protein 40 148 IPR035513 -
Bva05g01176 462 SUPERFAMILY Pectin lyase-like 162 459 IPR011050 -
Bva05g01176 462 SMART PMEI_2 23 187 IPR006501 GO:0004857
Bva05g01176 462 Pfam Plant invertase/pectin methylesterase inhibitor 54 139 IPR006501 GO:0004857
Bva05g01176 462 Pfam Pectinesterase 166 446 IPR000070 GO:0030599|GO:0042545
Bva05g01176 462 CDD PMEI-like_4 3 141 - -
Bva05g01176 462 PANTHER PECTINESTERASE 141 460 - -
Bva05g01176 462 PANTHER PECTINESTERASE 34 136 - -
Bva05g01176 462 PANTHER PECTINESTERASE/PECTINESTERASE INHIBITOR 44-RELATED 141 460 - -
Bva05g01176 462 PANTHER PECTINESTERASE/PECTINESTERASE INHIBITOR 44-RELATED 34 136 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva05g01176 Bva-Chr5 6098020 6100604 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva05g01176 3 460 Carbohydrate Esterase AT3G43270 58.721 0.0 623
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva05g01176 K01051 - gmx:100777500 659.062