Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva05g01175 ATGGCATTCTTGTTTCTGATGCTGGTTTTCAGATTTTGCACCCCATTAGCATCAGGTGCTGGCGTTGCTAGCCCTGATTTCGTACAGCCAGAGTGCCTGAAAGTTGCTGCTTCTGAATTTGTTGGCTCTGTGAGGGGAGTGCTTGATGTTTTGCAAAAGGTTATTTCCATTTTGTCTAAGCTCGGTAACTCTTTTGGCGATTTTCGTGTTTCAAATGCCATTTCTGATTGTCTAGATTTGCTTGACTTGTCTTCTGACGAGCTCAGTTGGACCGCATCCGCTACTCAGAATCCCAGTGGCAAGCATAACAGCACAGGGAAGTTAAGTTCTGATCTGAGAACATGGTTAAGTGCTGCACTTGCAAATCCAGAGACATGCATGGAGGGATTTGAAGGTAGCAATAGCATTGCGAAAACTCTGATATCAGCTGGGCTAAGCCAAATGACCACAATGGTCAAACAGCTTCTCTCCCAGGTGCACCCAACTGCGGACAATCTTCCCACAAAAAAGGGCCAATTTCCTTCGTGGGTTAAACCAGGAGATAGAAAGTTGCTGCAAGCAAATGTGGTGGCTGTAGATGTTGTGGTAGCTGCTGATGGCACTGGGAATTTCACTAAGGTAATGGATGCGGTGTTAGCTGCACCAGACTACAGCATGAAACGCTATGTGATATACATAAAACGCGGTGTTTACAAAGAGAATGTGGagatcaagaagaagaagtggaACCTCATGATGATTGGAGATGGCATGGATGCTACTGTTATCTCCGGTAACCTGAATGTCGTCGACGGTTGGACCACTTTCCGATCGGCTACCTTCGCTGTTAGTGGAAGAGGGTTCATAGCACGAGACCTTTCTTTCGAGAACACCGCAGGTCCCGAGAAACACCAAGCAGTGGCACTGAGATCCGATTCTGACCTCTCTGTCTTCTATCGATGTGGGTTCTTCGGTTACCAAGATACCCTTTACACTCACACCATGCGCCAATTCTACAGAGAATGCAAAATCAGTGGCACTGTGGATTTCATCTTTGGCGATGCCACTGCACTGTTCCAAAACTGCAAAATACTTGCCAGAAAAGGCTTACCAAATCAGAAAAACACCATCACAGCACAAGGTCGCAAAGACCCAAATGAGCCAACGGGTTTCTCCATCCAATTCTGCAACATTACTGCAGACTCTGACCTTCTGCCCTCTGTTAACACCACCCAAACTTACCTTGGCAGGCCCTGGAAGGAATTTTCTCGAACAGTCATCATGCAATCTTATTTGAGCAATGTGTTGAGACCAGAAGGGTGGTTAGAGTGGAACGGACCATTTGCTTTGGACACATTGTATTATGCAGAGTACATGAATTATGGACCAGGAGCTGGTTTAGCTAACAGGATCAAATGGCCAGGCTACCATGTGCTTAATAGTTCTAGTGAAGCTAATAACTTTACTGTGGCCCAGTTCATTGAAGGGAATCTATGGTTACCTTCTACAGGTGTGACCTTCACTGCAGGATTGGGGATTTA 1520 0.4539 MAFLFLMLVFRFCTPLASGAGVASPDFVQPECLKVAASEFVGSVRGVLDVLQKVISILSKLGNSFGDFRVSNAISDCLDLLDLSSDELSWTASATQNPSGKHNSTGKLSSDLRTWLSAALANPETCMEGFEGSNSIAKTLISAGLSQMTTMVKQLLSQVHPTADNLPTKKGQFPSWVKPGDRKLLQANVVAVDVVVAADGTGNFTKVMDAVLAAPDYSMKRYVIYIKRGVYKENVEIKKKKWNLMMIGDGMDATVISGNLNVVDGWTTFRSATFAVSGRGFIARDLSFENTAGPEKHQAVALRSDSDLSVFYRCGFFGYQDTLYTHTMRQFYRECKISGTVDFIFGDATALFQNCKILARKGLPNQKNTITAQGRKDPNEPTGFSIQFCNITADSDLLPSVNTTQTYLGRPWKEFSRTVIMQSYLSNVLRPEGWLEWNGPFALDTLYYAEYMNYGPGAGLANRIKWPGYHVLNSSSEANNFTVAQFIEGNLWLPSTGVTFTAGLGI 506
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva05g01175 506 Pfam Pectinesterase 193 490 IPR000070 GO:0030599|GO:0042545
Bva05g01175 506 ProSitePatterns Pectinesterase signature 1. 218 237 IPR018040 -
Bva05g01175 506 Pfam Plant invertase/pectin methylesterase inhibitor 54 157 IPR006501 GO:0004857
Bva05g01175 506 Gene3D - 190 505 IPR012334 -
Bva05g01175 506 PANTHER PECTINESTERASE 168 504 - -
Bva05g01175 506 PANTHER PECTINESTERASE/PECTINESTERASE INHIBITOR 44-RELATED 168 504 - -
Bva05g01175 506 SMART PMEI_2 23 158 IPR006501 GO:0004857
Bva05g01175 506 Gene3D Invertase/pectin methylesterase inhibitor family protein 40 161 IPR035513 -
Bva05g01175 506 TIGRFAM PME_inhib: pectinesterase inhibitor domain 51 142 IPR006501 GO:0004857
Bva05g01175 506 PANTHER PECTINESTERASE/PECTINESTERASE INHIBITOR 44-RELATED 34 166 - -
Bva05g01175 506 SUPERFAMILY Pectin lyase-like 189 503 IPR011050 -
Bva05g01175 506 CDD PMEI-like_4 4 161 - -
Bva05g01175 506 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 44 151 IPR035513 -
Bva05g01175 506 ProSitePatterns Pectinesterase signature 2. 337 346 IPR033131 -
Bva05g01175 506 PANTHER PECTINESTERASE 34 166 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva05g01175 Bva-Chr5 6089257 6091949 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva05g01175 3 504 Carbohydrate Esterase AT3G43270 65.310 0.0 719
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva05g01175 K01051 - gmx:100777500 766.533