Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva05g01174 ATGGCTTCCTCATCTCATAaactcttcttcctcctcttgtTAACAATCTTCTTCTCACACACTTTGGTTGTGAAGTCCTCtaatttttcatcaaacacCTTGCATtctaatttctcttcctttagATCTTTCTGCAGATCCACTCCATACCCAGATGCTTGCTTCAATTCATTGAAGCTTTccatttctataaatataagCCCGAACATCCTCAGCTTCCTCCTTCAGTCCCTCCAAGTAGCAATCTCAGAAGCAACACGGCTTTCTGATCTATTCGACAAAGCTGGAAACCAGAACATCATTGAGAAGCAAAGGGGAACAGTCCAAGACTGCAAAGAACTTCACCAGTCCACATTGACCTGTCTGAAAAGATCACTATCTGGGATTCGTGCAGCAAACAGCAGAAAGATAGCAGATGCAAGAACCTACCTCAGTGCAGCACTCACCAACAAGAATACTTGCTTGGAAGGCCTAGACACTGCTTCTGGTTCCCTGAAGCCAGTTATAGTCAACTCTATGATTGACACTTACAAGCATGTAAGCAATTCTCTCTCCGTGCTTGCCAACCCAGGCATAAGTTATCCCGAAGGCCACAAGAATAGGCGTTTGTTGGGTGTTCCTGCATGGCTATCAAGCAAAGATCGCCGCTTGTTGCAGAGTGACGATGAGGGTGGATATGATATTGTTGTGGCTGCAGATGGAACAGGGAACTTCACCACCATCACTGAAGCTATTAACTTCGCTCCAAATAACGGCTTTGACAGGACTCTAATCTATATTAAAGAAGGGGTTTATGAGGAAAATGTCGAAATCCCAAGTTATAAGACTAACATTGTTCTGCTTGGAGATGGAAGTGACGTCACTTTCATCACTGGTAACAGAAGCGTTGTTGATGGCTGGACCACTTTTAGATCAGCTACTCTAgCTGTTTCTGGTGAGGGCTTTCTGGCTCGTGATATAGCGATTGTGAACAGTGCTGGGCCAGAGAAGCATCAAGCAGCAGCCTTGAGAGTAAACGCAGACTTAACTGCCCTCTATAGGTGTGCCATTTATGGTTACCAAGATACTCTTTACGTCCACACCTTCAGGCAATTCTACAGAGAGTGCGACATTTACGGCACCATAGATTTCATATTCGGAAACGCAGCTGTGGTCTTTCAAGAATGTGAAATTGTATCAAGAAAGCCATTACCAGGTCAATTCACTGTGATTACTGCACAATCCAGAGACACCCCAGATGAGTATACTGGAATCTCAATCCAGAATTGCTCTATTCTAGCCACCGATGATCTGTATAAAAGCTCCAGCAGCTTCAAGAGCTACTTAGGAAGGCCGTGGAAGAACTATTCTACCACTGTTTTCCTCGAATCCTACATTGGTGACTTCATCGACCCAATGGGGTGGACAAAGTGGTCTAATGATCAAGGCATAGACAGTTTGTATTATGGAGAATATCAGAATTATGGGCCTGGTTCTGCCGTGGATAATCGAGTAACTTGGCCAGGGTACCATGTGATGGATTATCAGGATGCTTATAATTTCACAGTTTCAGAGTTCATTCAAGGTGATGCTTGGCTTGAGTCCACTTCATTTCCTTACGATGATGGAATTTG 1613 0.4228 MASSSHKLFFLLLLTIFFSHTLVVKSSNFSSNTLHSNFSSFRSFCRSTPYPDACFNSLKLSISINISPNILSFLLQSLQVAISEATRLSDLFDKAGNQNIIEKQRGTVQDCKELHQSTLTCLKRSLSGIRAANSRKIADARTYLSAALTNKNTCLEGLDTASGSLKPVIVNSMIDTYKHVSNSLSVLANPGISYPEGHKNRRLLGVPAWLSSKDRRLLQSDDEGGYDIVVAADGTGNFTTITEAINFAPNNGFDRTLIYIKEGVYEENVEIPSYKTNIVLLGDGSDVTFITGNRSVVDGWTTFRSATLAVSGEGFLARDIAIVNSAGPEKHQAAALRVNADLTALYRCAIYGYQDTLYVHTFRQFYRECDIYGTIDFIFGNAAVVFQECEIVSRKPLPGQFTVITAQSRDTPDEYTGISIQNCSILATDDLYKSSSSFKSYLGRPWKNYSTTVFLESYIGDFIDPMGWTKWSNDQGIDSLYYGEYQNYGPGSAVDNRVTWPGYHVMDYQDAYNFTVSEFIQGDAWLESTSFPYDDGI 537
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva05g01174 537 PANTHER PECTINESTERASE 7 536 - -
Bva05g01174 537 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 42 187 IPR035513 -
Bva05g01174 537 Gene3D - 223 537 IPR012334 -
Bva05g01174 537 CDD PMEI-like_3 43 190 - -
Bva05g01174 537 SUPERFAMILY Pectin lyase-like 226 534 IPR011050 -
Bva05g01174 537 Pfam Pectinesterase 227 523 IPR000070 GO:0030599|GO:0042545
Bva05g01174 537 Pfam Plant invertase/pectin methylesterase inhibitor 41 185 IPR006501 GO:0004857
Bva05g01174 537 Gene3D Invertase/pectin methylesterase inhibitor family protein 38 189 IPR035513 -
Bva05g01174 537 PANTHER PECTINESTERASE 7 536 - -
Bva05g01174 537 ProSitePatterns Pectinesterase signature 2. 371 380 IPR033131 -
Bva05g01174 537 SMART PMEI_2 36 186 IPR006501 GO:0004857
Bva05g01174 537 TIGRFAM PME_inhib: pectinesterase inhibitor domain 12 187 IPR006501 GO:0004857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva05g01174 Bva-Chr5 6084330 6086303 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva05g01174 33 537 Carbohydrate Esterase AT2G26440 67.816 0.0 716
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva05g01174 - - gmx:100776969 795.423
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva05g01174 05 6084330 6086303 Bva05g01174 05 6084330 6086303 ECH