Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva05g01173 ATGGTTTTTCAAGATTTCGACCTCATATCGGAACGGCGGAAAGCCGAGAGGAAACAGAAGCTCAAGAAGAGAATAATCATCGGCGTAATCTCCACCGTTGTCCTCGCCGGCCTAATCGCCGCCGCAGTTTTCGTGCTTACCAAaactgaagaagaagagcaCAAGGGGCACAAAAAACCTCCCTCTGCCCCCCCCGTGAAAGCGATATCGCGCGGACAAAAGATGGTCAAAATGATGTGCAACAGCACAGATTACAAGACTAAATGCGAGGAATCTCTCGGCAAAGCCGTGAAATCTGATCCAAAATTGGACCAACCAAAAGATCTTCTCGAGGTAGCCATCAAGACTGCAGAGGAAGAGCTCAACAAGGCCTTCGACAAAATCAAAGCcatgaaatttgaatctgAGAAAGACAAAGGAGCGTTTGAAGATTGTAATAAGCTCATCGATGATGCCAAGGAGGAACTGGGATTCTCTctctccgaagttgacaaaaacGAATTGAAAAAACTTGTGAACAGAACTGATGATCTGAGCAATTGGCTAAGTGCAGTCATGTCTTACCACGAAACGTGCGTTGATGGATTCCCCGATGGGAAATTGAAGACAGATATTGAGAAAACATTTAAGGATTCCAAGGAATACGTTAGCAACGCGCTTGCTATCATGTCTGATGTTACTTCGTTGCTTTCTGCGTTCCAGTCAGCGACAGCCAGCACTGCTCGTCACTTGCTGGCAGACAAGAACAGCTCTCCAGCCGATGCTTTGGGGAACGATGGGCTTCCTAATTGGATGAGCCAGGAACAACGACGGGAGTTGAAAGCGGCGGATGACAAGCCCACACCTAATGTCACCGTCGCCAAAGATGGCAGTGGACAGTTCAAGACCATCTCTGAAGCTTTAAAAGTCATCCCTGAAAAATACCAAGGAAGATATGTGGTTTACGTTAAAGAAGGGGTATATGAGGAGACTGTGACAGTGACAAAGAAAATGGTAAATTTAACCTTGTATGGCGATGGATCACAGAAGAGCATCATCACCGGCAGCAAAAACTTTGTTGATGGAGTCAGAACTTTCCAAACCGCAACCTTTGTGGTTCTAGGAGAAGGCTTTCTGGGCAAGGCAATAGGAATCAGAAACACTGCCGGCCCAGAGAAGCACCAAGCAGTGGCTGCAAGAGTGCAAGCAGACCATGCAGTGTTTGTGAACAGCCGCTTTGAGGGCTACCAAGACACATTGTACGCACAAACCCATAGACAATACTACAGAAGCTGTGTGATTTCAGGCACAGTCGATTTCATCTTCGGTGATGCAGCTGCAGTGTTCCAGAACTGCATTATGGTTCTCAGAAAGCCAATGGACAACCAACAGAACATCGTCACCGCGCAAGGGAGGATCGACAAGCGCGAAACCACAGGACTAATTCTGCAGAACTGTGAGATTAAACCTGATGACAATTTGGACAAGAACAAGATCAAGAGCTACCTCGGAAGACCATGGAAGGAATATTCTAGAACCATTGTCATGGAATCTCAGATTGGTGATGTAATTCACCCTGATGGGTGGCTCCCCTGGGAAGGAGACTTTGCACTCAAGACACTGTTTTATGGCGAGTTCAACAACACGGGGCCTGGTGCCAGCACCAGCAAGAGGGTCAAGTGGCCTGGCTACAAAGTGTTGACCAAAGATGAGGCCAAAGAGTTTACAGTAGGGAATTTCATAGGAGGGACTTGGATAATAGGCAGTGTACCTGTTCAGCTTGCATTCTCTAATTG 1775 0.4575 MVFQDFDLISERRKAERKQKLKKRIIIGVISTVVLAGLIAAAVFVLTKTEEEEHKGHKKPPSAPPVKAISRGQKMVKMMCNSTDYKTKCEESLGKAVKSDPKLDQPKDLLEVAIKTAEEELNKAFDKIKAMKFESEKDKGAFEDCNKLIDDAKEELGFSLSEVDKNELKKLVNRTDDLSNWLSAVMSYHETCVDGFPDGKLKTDIEKTFKDSKEYVSNALAIMSDVTSLLSAFQSATASTARHLLADKNSSPADALGNDGLPNWMSQEQRRELKAADDKPTPNVTVAKDGSGQFKTISEALKVIPEKYQGRYVVYVKEGVYEETVTVTKKMVNLTLYGDGSQKSIITGSKNFVDGVRTFQTATFVVLGEGFLGKAIGIRNTAGPEKHQAVAARVQADHAVFVNSRFEGYQDTLYAQTHRQYYRSCVISGTVDFIFGDAAAVFQNCIMVLRKPMDNQQNIVTAQGRIDKRETTGLILQNCEIKPDDNLDKNKIKSYLGRPWKEYSRTIVMESQIGDVIHPDGWLPWEGDFALKTLFYGEFNNTGPGASTSKRVKWPGYKVLTKDEAKEFTVGNFIGGTWIIGSVPVQLAFSN 591
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva05g01173 591 Gene3D Invertase/pectin methylesterase inhibitor family protein 72 227 IPR035513 -
Bva05g01173 591 PANTHER PECTINESTERASE 14 587 - -
Bva05g01173 591 Pfam Pectinesterase 283 576 IPR000070 GO:0030599|GO:0042545
Bva05g01173 591 TIGRFAM PME_inhib: pectinesterase inhibitor domain 71 224 IPR006501 GO:0004857
Bva05g01173 591 CDD PMEI-like_3 79 224 - -
Bva05g01173 591 SMART PMEI_2 71 222 IPR006501 GO:0004857
Bva05g01173 591 Coils Coil 107 134 - -
Bva05g01173 591 SUPERFAMILY Pectin lyase-like 281 584 IPR011050 -
Bva05g01173 591 Gene3D - 277 588 IPR012334 -
Bva05g01173 591 PANTHER PECTINESTERASE 14 587 - -
Bva05g01173 591 Pfam Plant invertase/pectin methylesterase inhibitor 75 222 IPR006501 GO:0004857
Bva05g01173 591 ProSitePatterns Pectinesterase signature 2. 427 436 IPR033131 -
Bva05g01173 591 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 73 225 IPR035513 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva05g01173 Bva-Chr5 6080843 6083433 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva05g01173 1 589 Carbohydrate Esterase AT4G33230 50.000 0.0 590
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva05g01173 - - qsu:112019775 758.444
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva05g01173 05 6080843 6083433 Bva06g00463 06 5361103 5363972 BWGD
Bva05g01173 05 6080843 6083433 Bva05g01173 05 6080843 6083433 ECH