Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Bva05g01171 | ATGAGCATGTCACTCAAAAGGCTAGACCAGGCCCTGAAGGCCCTGAAATCCCCAAGAAGAAACAAGCACGACATCCAAACGTGGTTAAGTGCTTCTCTGACTTTCCAACAAACTTGCAAAGACTATGCAGAAGCAGACAACCCTAAACTCTTAGGTGGCTTCCTGGGAAGAATCTCCAAGAAGATGGACTATCTTTCAGCATTGACAAGTAACCCCTTAGCACTTGTTAACCGGATCACCGGCATGCCAAACGGCACAAAACCTCGACGTCAGCTTCTCGGCGgcgaagagaaacaaaaatttcccAAGTGGGTAtcagggagagagagaaagttgcTTCAAGAAAGCACCATAAAAGCAAATGTCATAGTAGCACAAGATGGGTCAGGAAACTACAAAACAGTCTCAGAAGCTATTCAGGCTGCTTCTGGATCGCGGTTTGTGATATACGTTAAGGCTGGAGTTTATAAGGAGAAGATTCACAGTAACAAGGACGGGATCAGCTTGATTGGTGATGGCAAATATTCAACTATCATTGTTGGTGGTGCAAGCGTGAATGGAGGCACTTCTTTATCTGGCTCCGCCACGTTCAGTTA | 596 | 0.4245 | MSMSLKRLDQALKALKSPRRNKHDIQTWLSASLTFQQTCKDYAEADNPKLLGGFLGRISKKMDYLSALTSNPLALVNRITGMPNGTKPRRQLLGGEEKQKFPKWVSGRERKLLQESTIKANVIVAQDGSGNYKTVSEAIQAASGSRFVIYVKAGVYKEKIHSNKDGISLIGDGKYSTIIVGGASVNGGTSLSGSATFS | 198 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Bva05g01171 | 198 | Pfam | Plant invertase/pectin methylesterase inhibitor | 2 | 75 | IPR006501 | GO:0004857 | |
| Bva05g01171 | 198 | CDD | PMEI-like_3 | 1 | 81 | - | - | |
| Bva05g01171 | 198 | PANTHER | PECTINESTERASE/PECTINESTERASE INHIBITOR 54-RELATED | 1 | 197 | - | - | |
| Bva05g01171 | 198 | Pfam | Pectinesterase | 121 | 197 | IPR000070 | GO:0030599|GO:0042545 | |
| Bva05g01171 | 198 | PANTHER | PECTINESTERASE | 1 | 197 | - | - | |
| Bva05g01171 | 198 | Gene3D | Invertase/pectin methylesterase inhibitor family protein | 1 | 81 | IPR035513 | - | |
| Bva05g01171 | 198 | SUPERFAMILY | Pectin lyase-like | 117 | 197 | IPR011050 | - | |
| Bva05g01171 | 198 | SUPERFAMILY | Plant invertase/pectin methylesterase inhibitor | 3 | 80 | IPR035513 | - | |
| Bva05g01171 | 198 | Gene3D | - | 115 | 198 | IPR012334 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Bva05g01171 | Bva-Chr5 | 6075725 | 6076321 | Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Bva05g01171 | 22 | 196 | Carbohydrate Esterase | AT2G45220 | 46.927 | 9.68e-34 | 123 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Bva05g01171 | K01051 | - | pop:18100268 | 258.84 |