Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva05g01166 ATGATGATCCATGCTCTAGGTTCTTCAAGACATTGTAGTGTCCTTGCTGTCTTGTGTGGAAAATCACGTGAAGATCAACAAAAGCAGAAGCAGGATACTTCTGAGGATCGACCTCAATACCCTTTTCCAGAGCTTGTTTCATCCGGGCGTTTGGAGgttaaaattttgacCAAAGCAACAGCTGATGAGCTTAGTAAAGTTCTTGAATCACTAGAGCCGAATTTTGTTTACCTGCAAGGCGAGAAGCTAGAAGATAATGGAGAAATTGGGTCTCTTGTATGGGAGGATGTTGACCTATCCATCCCAGAAGCCTTATGTGGgttattttcttccaaattaCCCAATACGGTTTATTTGGAAACTCctaaaggagaaaaattgGCAGAGGCACTCCATCATAAGGGAGTTCCTTACACAATATATTGGaaaagtgaattttcaaaatatgcaGCTTTGCAGTTTCGTCAAGCCTTTTTCTCAGTGGCACAAAGTACATCTGGACATACCTGGGATGCTTTCCAGCTTGCTCTTGCATCTTTTAGGCTATACTGTGTACGCAACAATATCTTGCCATCCTCCAGCCAGAAGGGTACTTGCAAGCTTTGGCCGCAAATGCTTGGGGACCCTCCAAAGATTGATATTGGTCCATACGAGGTAAACATGAAGGAGGAAGAAAGCTCTCCTGAGGTTGCTTCTGCCATAAAGATTTATGATAATGATGTGAACATGAGATTCCTTGTCTGTGGAGTTCCCTGCACATTGGATGCTTGCTTATTGGGATCACTGGAGGATGGACTCACTGCTCTCCTGTGCACGGAAATACGGGGATGTAAACTTCATAACCGGACAAGtgctccaccaccacctcTTCAGGCAGGGACATTTTCACGTGGTGTGGTGACAATGCGTTGTGATATATCCACATGCAGTTATGCTCATATATCACTTTTAGTGTCTGGTAGTGCAGATGCTTGTTTTAATGACCAGCTTCtggaaaatcatattaaaaaggAGCTCATTGAGAAGAGTCAGCTAGTCCAGGCATTGCCTAATAGTGAAGAAAGCAAACTGTCCTCCTCTGAGCCCCGAAGGTCAGCCTCAGTAGCATGTGGAGCTAGTGTATTTGAAGTTTGCATGTGTGTGCCTACATGGGCTTCACAGGTTCTGAGACAACTTGCACCAGATGTGTCATACCGTAGCCTAGTTATGTTGGGGATTGCTAGTTTTCAGGGATTGTCTGTTGCATCTTTTACTAAAGATGATGCAGAAcgtctccttttcttttgtactaAGCATGCTAACGAAAATTGTCCCAAAGAGCCTGTTTTCTCTGGGCATCCTAGGTGGTTGGTGCCTCCAGCAGCTGCTCGAAAAAGGTCAGATCCATCCTCACTGGCAAAATCAATCAAAGCTAGTGGCCTTGCAGCTGAGTATAGGGATAATGGTCAACAGAAATTGAACACTGCTGCATTGAGGCCAATCCCTCAATTTTGTCGTCACAAGATCCTACCTTTTTCTGGATTGGGCGAGGGTGAAAAATATGATGGAAACCATGGAAAAACAAATCTGCCAGTTGTTCCTACAAAACATAATGTTGTAGGCACTGCTTCAGTTACTCATCGGAAATCTTTGTCAAACTCATTTCAGGCTCAACAGATTATTTCTTTGAATCCACTACCTCTGAAGAAACATGGTTGTGACAGAGTTCCGATTCGAGTTTGCTCAGAGGAGGAATTCCTGAAGGACGTAATGCAATTTCTGATCCTTCGTGGACATACTCGTCTCATTCCGCAAGGGGGACTTGCTGAGTTCCCTGATGCTGTTTTGAATGCAAAACGCCTTGACCTTTTCAACTTGTATAGAGAGGTGGTTTCAAGAGGAGGCTTTCATGTGGGAAATGGTATTAATTGGAAAGGACAGGTTTTCTCAAAGATGCGCAATCACACTTTGACAAATAGAATGACCGGTGTGGGTAATACACTGAAAAGACATTATGAAACGTATCTTCTAGAATATGAATTAGCTCATGATGATGTAGATGGAGAATGTTGCTTGTTGTGCCGCAgTAGTGCAGCAGGAGACTGGGTGAATTGTGGTATTTGTGGAGAGTGGGCTCACTTTGGCTGTGATAGGCGGCAGGGACTAGGTGCATTTAAGGACTATGCTAAAACCGATGGCTTGGAGTACATTTGTCCTCATTGCAGCACATCAAGCTCCAAGAAGAAATCCCAGAAAACTACGAATGGGTATTA 2252 0.417 MMIHALGSSRHCSVLAVLCGKSREDQQKQKQDTSEDRPQYPFPELVSSGRLEVKILTKATADELSKVLESLEPNFVYLQGEKLEDNGEIGSLVWEDVDLSIPEALCGLFSSKLPNTVYLETPKGEKLAEALHHKGVPYTIYWKSEFSKYAALQFRQAFFSVAQSTSGHTWDAFQLALASFRLYCVRNNILPSSSQKGTCKLWPQMLGDPPKIDIGPYEVNMKEEESSPEVASAIKIYDNDVNMRFLVCGVPCTLDACLLGSLEDGLTALLCTEIRGCKLHNRTSAPPPPLQAGTFSRGVVTMRCDISTCSYAHISLLVSGSADACFNDQLLENHIKKELIEKSQLVQALPNSEESKLSSSEPRRSASVACGASVFEVCMCVPTWASQVLRQLAPDVSYRSLVMLGIASFQGLSVASFTKDDAERLLFFCTKHANENCPKEPVFSGHPRWLVPPAAARKRSDPSSLAKSIKASGLAAEYRDNGQQKLNTAALRPIPQFCRHKILPFSGLGEGEKYDGNHGKTNLPVVPTKHNVVGTASVTHRKSLSNSFQAQQIISLNPLPLKKHGCDRVPIRVCSEEEFLKDVMQFLILRGHTRLIPQGGLAEFPDAVLNAKRLDLFNLYREVVSRGGFHVGNGINWKGQVFSKMRNHTLTNRMTGVGNTLKRHYETYLLEYELAHDDVDGECCLLCRSSAAGDWVNCGICGEWAHFGCDRRQGLGAFKDYAKTDGLEYICPHCSTSSSKKKSQKTTNGY 750
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva05g01166 750 SUPERFAMILY ARID-like 574 687 IPR036431 GO:0003677
Bva05g01166 750 SMART ARID_2 570 673 - -
Bva05g01166 750 PANTHER ARID/BRIGHT DNA-BINDING DOMAIN PROTEIN 6 750 - -
Bva05g01166 750 Pfam ARID/BRIGHT DNA binding domain 576 673 IPR001606 GO:0003677
Bva05g01166 750 CDD ARID 575 673 - -
Bva05g01166 750 CDD PHD_ARID4_like 683 734 - -
Bva05g01166 750 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 4 6 750 IPR042293 -
Bva05g01166 750 ProSiteProfiles ARID domain profile. 573 677 IPR001606 GO:0003677
Bva05g01166 750 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 679 736 IPR013083 -
Bva05g01166 750 Gene3D - 571 678 IPR036431 GO:0003677
Bva05g01166 750 SUPERFAMILY FYVE/PHD zinc finger 669 738 IPR011011 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva05g01166 Bva-Chr5 6027253 6036132 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva05g01166 2 749 ARID Transcription Factor Family AT3G43240 65.513 0.0 983
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Bva05g01166 ARID 4.4e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva05g01166 - - gmx:100775894 1226.85
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva05g01166 05 6027253 6036132 Bva05g01166 05 6027253 6036132 ECH