Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva05g01165 ATGGTTGAGCCAGTGAAACTGCGTCCTCCATTTGTTTGTGAAATTTGCACTGAGACTAAGACGGTACAGGAATCATTCAGCATCAATGGTTGCTCTCACACTTACTGTACCGAGTGTATAACTATGTATGTGGCATCCAAGCTACAGGAAAATATCATTAACATTCGGTGCCCTGTACCTAAGTGCATTAGTGTGCTGGAGCCTCATGATTGCTGCCCAATTCTTCCCACAGAAGTATTTGATAGGTGGGGTAAAGCTCTGTGTGAGGCTGTAATAGTTGCTTCTGAGAAGTTCTATTGTCCATTCAAGGACTGCTCTGCACTACTGATTAATGATGGGAAAGAGGCTGTGAAGGAGTCAGAGTGTCCATATTGTTGGAGGTTGTTCTGTGCACAGTGTAAGGTGCCTTGGCATGCAGGAATTGATTGCACAGATTTTCAGAAATTGAACAGGGACGAGAGACAGAGGGAAGATATCATGTTGATGGAGCTTGCCCAGAACAAGAACTGGAGGAGGTGTCCTGAGTGTGGATTCTACGTGGAGAAATCTACAGGCTGCATGTATATGAAATGCAGGTGTGGAATTGCTTTCTGTTATAGCTGTGGAACTGTTTCAACGAGTAACTCCCATAACTGTTCCAAGTGTGGTCGCTA 653 0.4456 MVEPVKLRPPFVCEICTETKTVQESFSINGCSHTYCTECITMYVASKLQENIINIRCPVPKCISVLEPHDCCPILPTEVFDRWGKALCEAVIVASEKFYCPFKDCSALLINDGKEAVKESECPYCWRLFCAQCKVPWHAGIDCTDFQKLNRDERQREDIMLMELAQNKNWRRCPECGFYVEKSTGCMYMKCRCGIAFCYSCGTVSTSNSHNCSKCGR 217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva05g01165 217 SUPERFAMILY RING/U-box 154 215 - -
Bva05g01165 217 SUPERFAMILY RING/U-box 87 148 - -
Bva05g01165 217 SUPERFAMILY RING/U-box 10 90 - -
Bva05g01165 217 Gene3D - 140 217 - -
Bva05g01165 217 ProSiteProfiles TRIAD supradomain profile. 9 217 IPR044066 -
Bva05g01165 217 ProSiteProfiles Zinc finger RING-type profile. 13 61 IPR001841 -
Bva05g01165 217 ProSitePatterns Zinc finger RING-type signature. 31 40 IPR017907 -
Bva05g01165 217 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 9 95 IPR013083 -
Bva05g01165 217 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 10 216 IPR031127 GO:0004842|GO:0016567
Bva05g01165 217 SMART ibrneu5 153 215 IPR002867 -
Bva05g01165 217 SMART ibrneu5 81 143 IPR002867 -
Bva05g01165 217 Pfam IBR domain, a half RING-finger domain 93 143 IPR002867 -
Bva05g01165 217 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 10 216 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva05g01165 Bva-Chr5 6025561 6026767 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva05g01165 13 203 C3H Transcription Factor Family AT2G19610 26.733 1.29e-19 84.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva05g01165 K11975 - vvi:100252570 325.094
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva05g01165 05 6025561 6026767 Bva05g01165 05 6025561 6026767 ECH