Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva05g01147 ATGAAGGCTCCACCAAATGGTTACTTGCCTAATTCTGGCGAAGGAGAAAGGAAGGCCATTAATTCAGAGTTATGGCATGCATGTGCTGGGCCGTTGGCTTCTTTGCCTCCTGTTGGAAGTCTGGTGGTTTACTTCCCCCAAGGACACAGTGAGCAAGTTGCAGCGTCCATGCAAAAGGAGGCTGATTTCATACCTAGTTACCCTAACTTACCATCCAAGTTGATTTGCATGCTTCACAATGTCGCGTTGCTTGCGGATCCTGAAACTGACGAGGTTTATGCACAGATGACCCTTCAGCCTGTAAACAAATATGACAAGGAAGCAATACTAGCATCAGACATGGGTCTCAAGCAAAGCAGACAGCCTACTGAGTTCTTTTGCAAAACTCTTACAGCTAGTGACACAAGCACACATGGTGGATTTTCTGTGCCTCGTAGAGCAGCTGAGAAGATATTCCCACCTCTGGATTTTTCAATGCAACCCCCCGCACAGGAGATTGTTGCCAAAGATTTGCACGACAATACATGGACATTTAGGCATATCTACCGCGGTCAACCAAAGAGGCATTTACTGACTACTGGGTGGAGTGTCTTTGTTAGCACAAAAAGACTGTTTGCTGGAGATTCTGTTCTTTTTATTAGAGATGAAAAACAGCAACTTCTGTTGGGAGTAAGGCATGCTAATAGACAGCAGCCGGCTCTCTCTTCTTCAGTTATATCCAGCGACAGCATGCATATTGGAATTCTTGCTGCTGCAGCTCATGCTGCTGCAAATAACAGTCCCTTTACTATATTTTACAATCCAAGGGCCAGCCCCTCGGAATTTGTTGTTCCATTAGCCAAGTATAACAAAGCAATGTACACTCAAGTTTCTCTTGGAATGAGATTTAGGATGATGTTTGAGACTGAAGAATCAGGAGTACGCAGATACATGGGAACAATCACAGGTATAAGTGATTTGGATCCTGTGAGATGGAAAAATTCACAGTGGCACAATCTTCAGGTTGGATGGGACGAATCCACTGCTGGTGATCGCCCAGGCAGAGTTTCAACTTGGGAAATTGAACCAGTAGTGACTCCATTTTACATTTGTCCACCCCCATTTTTCAGGCCCAAGTTCCCCAAGCAACCGGGAATGCCAGATGATGAGTCTGATATAGAAAATGCTTTCAAGAGAGCTGTGCCCTGGCTTGTAGATGAGTTTGGCATGAAGGATGCGTCAAGTTCAATCTTTCCTGGTTTGAGTTTAGTGCAGTGGATGAGCATGCAgcagaataatcaattttctgctGCTCAACCAGGATTTTTCCCATCCATCATTTCATCTAATTCTTTGCATAGTAACCTTGGCACGGACGATCCATCCAAGTTGTTGAGTTTTCAAGCCCCTGCCCTCTCTTCCCCAAATCTTCAATTTAACAAACCTAACTTACAAAACCATGTCAACCAATTGCAACAGCCCCCTGCATCTTGGCCTCAGCAGCCGCAGCTGCAGTCATTGATGCAGACGCCAATAAACCAGCTTCAACAGCAGAGGCAGCAGCCACAGCCACAGCCACAACAACAGCAACTGCCTGAACCACAGAGCCTGCCACAGCTGCAGCAACCACAGCAACAGCAGCCCCAAATGCATCAGCAAAGAGCACAGCAGCCACAGCAACAGCAACAGTCATGTCAACCGGCCATTGTAAATAATGGGGTAGTTACTTCTAGCCAGATTCCAAGTCAGAGTGTACAGCAATCAGTAACCTACTCTCAGCTTCAGCAACAGCAATTACTGTCAGGCAGTATTCCCACCCAGCAAAGTATGCAGTCAGCTAGTAAGAATGCATTTCCAATGACGTCTTTACCACAAGATTCACAATTTCAGCAACAGATGGACCAGCAAGCTAGTCTCTTGCAGAGGCAGCAACAACAGACACAGTTGCAACAAACCCCGTTGCAGTTACTGCAACAAAGTTTGTCACAGAGGGCTCCACAGCAACCACAAGTAAGTCAACTGTCACAGCAAAATCTCTCAGAGCAACAACTGCAGTTACAGTTATTACAGAAattgcagcagcagcagcaacaacaacaacaacaacaacaacagcaacagCAACTTCTGCCGCCAGCAAGTCCACTTTTGCAGGCTCAGCTGCTACAGCAACAAAATGCTCATCAACAGAACCAGCAACTACAACAGCTACCTTTATCTCAGCATCAACCTCAACAGCTTAGCAATAATGCATTCTCGACAGACAAACTTCTCAACAGCAGCAGCTTCTCTTCTTCAGCTTTGATGCAACCACAACAACTTCCCTTGAACCAACCCCAGAACACTCAGAAACCACTTACAACTACCACAGCTCCTTCTACTCTAACAGAGGGAGATGCACCATCATGCTCAACTTCACCATCTACTAACAATTGCCAGATATCTCCACCAAATCTCCTGAAGAGAAATCACCAAGTACCAGCCACATTAGGGGGGAGCCTGGTAGTTGAGCCCGCAAGCAATCTGATTCAGGAGCTTCAGACTAAGTCTGACATCCAGATCAAACATGAGTTTCCCAGTGTCAAGGTACCTGACCAACAAAAGTATAAAGGGGTAATCACTGATCAGCTGGAAGCTTCCTCTTCTGGAACATCCTATTGTCTTGATCCTGTTAATGTCCAGCAGAACTTCCAACTTCCCAACTTCTGCATGGATGGGGATGTCCAATCACACCCCAGGAACAATCTACCATTCGCCTCTAATCTTGATGGACTAACGCCTGATACTTTACTCTCAAGAGGTTATGACTCCCCAAAAGATCTTCAAAACTTGCTCTCTAATTATGGCGGTGGTCCAAGAGATATTGAGACAGAGCTGTCGACTGCTGCCATCAGTTCACAGTCGTTTGGGGTGCCAAATATACCTTTTAAGCCTGGTTGTTCAAGCGATGTTGCCATCAACGACACCGTTCTGAATAATGGTTTGTGGACAAACCAGACCCAACGTATGCGAACATATACTAAGGTCCAAAAGCGTGGCTCTGTAGGAAGATGTATTGATGTCACCCGTTACAAGGGTTATGATGAACTCCGACATGATTTGGCTCGTATGTTTGGAATTGAAGGTCAACTTGAAGATCCTCACAGGACTGACTGGAAACTAGTATATGTCGATCATGAAAATGACATTCTTCTTGTTGGTGATGACCCTTGGGAAGAGTTCGTGAGCTGTGTCCAGAGCGTAAAGATATTGTCATCTGCTGAAGTGCAGCAAATGAGTTTGGATGGGGATTTAGGTAATGTTCCGATTCCCAATCAAGCTTGTAGTGGGACAGACAGTGGTAATGCATGGAGGGGACAATATGACGATACCTCTGCTGCCTCATTTAATCGGTA 3374 0.4469 MKAPPNGYLPNSGEGERKAINSELWHACAGPLASLPPVGSLVVYFPQGHSEQVAASMQKEADFIPSYPNLPSKLICMLHNVALLADPETDEVYAQMTLQPVNKYDKEAILASDMGLKQSRQPTEFFCKTLTASDTSTHGGFSVPRRAAEKIFPPLDFSMQPPAQEIVAKDLHDNTWTFRHIYRGQPKRHLLTTGWSVFVSTKRLFAGDSVLFIRDEKQQLLLGVRHANRQQPALSSSVISSDSMHIGILAAAAHAAANNSPFTIFYNPRASPSEFVVPLAKYNKAMYTQVSLGMRFRMMFETEESGVRRYMGTITGISDLDPVRWKNSQWHNLQVGWDESTAGDRPGRVSTWEIEPVVTPFYICPPPFFRPKFPKQPGMPDDESDIENAFKRAVPWLVDEFGMKDASSSIFPGLSLVQWMSMQQNNQFSAAQPGFFPSIISSNSLHSNLGTDDPSKLLSFQAPALSSPNLQFNKPNLQNHVNQLQQPPASWPQQPQLQSLMQTPINQLQQQRQQPQPQPQQQQLPEPQSLPQLQQPQQQQPQMHQQRAQQPQQQQQSCQPAIVNNGVVTSSQIPSQSVQQSVTYSQLQQQQLLSGSIPTQQSMQSASKNAFPMTSLPQDSQFQQQMDQQASLLQRQQQQTQLQQTPLQLLQQSLSQRAPQQPQVSQLSQQNLSEQQLQLQLLQKLQQQQQQQQQQQQQQQQLLPPASPLLQAQLLQQQNAHQQNQQLQQLPLSQHQPQQLSNNAFSTDKLLNSSSFSSSALMQPQQLPLNQPQNTQKPLTTTTAPSTLTEGDAPSCSTSPSTNNCQISPPNLLKRNHQVPATLGGSLVVEPASNLIQELQTKSDIQIKHEFPSVKVPDQQKYKGVITDQLEASSSGTSYCLDPVNVQQNFQLPNFCMDGDVQSHPRNNLPFASNLDGLTPDTLLSRGYDSPKDLQNLLSNYGGGPRDIETELSTAAISSQSFGVPNIPFKPGCSSDVAINDTVLNNGLWTNQTQRMRTYTKVQKRGSVGRCIDVTRYKGYDELRHDLARMFGIEGQLEDPHRTDWKLVYVDHENDILLVGDDPWEEFVSCVQSVKILSSAEVQQMSLDGDLGNVPIPNQACSGTDSGNAWRGQYDDTSAASFNR 1124
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva05g01147 1124 Pfam AUX/IAA family 994 1083 IPR033389 -
Bva05g01147 1124 CDD B3_DNA 125 217 IPR003340 GO:0003677
Bva05g01147 1124 Pfam B3 DNA binding domain 126 226 IPR003340 GO:0003677
Bva05g01147 1124 SUPERFAMILY CAD & PB1 domains 1010 1075 - -
Bva05g01147 1124 Coils Coil 672 702 - -
Bva05g01147 1124 MobiDBLite consensus disorder prediction 595 630 - -
Bva05g01147 1124 Gene3D - 289 360 - -
Bva05g01147 1124 SMART B3_2 126 228 IPR003340 GO:0003677
Bva05g01147 1124 PANTHER AUXIN RESPONSE FACTOR 19 1 1112 - -
Bva05g01147 1124 MobiDBLite consensus disorder prediction 1102 1124 - -
Bva05g01147 1124 Gene3D - 992 1086 - -
Bva05g01147 1124 SUPERFAMILY DNA-binding pseudobarrel domain 116 255 IPR015300 -
Bva05g01147 1124 Pfam Auxin response factor 252 334 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Bva05g01147 1124 MobiDBLite consensus disorder prediction 506 558 - -
Bva05g01147 1124 ProSiteProfiles B3 DNA-binding domain profile. 126 228 IPR003340 GO:0003677
Bva05g01147 1124 MobiDBLite consensus disorder prediction 757 810 - -
Bva05g01147 1124 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 1 1112 IPR044835 GO:0003677|GO:0006355|GO:0009725
Bva05g01147 1124 Gene3D - 123 227 IPR015300 -
Bva05g01147 1124 ProSiteProfiles PB1 domain profile. 997 1081 IPR000270 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva05g01147 Bva-Chr5 5897192 5905587 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva05g01147 1 489 B3 DNA Binding Superfamily AT1G19220 82.857 0.0 838
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Bva05g01147 AUX_IAA 4.1e-09 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva05g01147 K14486 - gmx:100804628 897.501
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva05g01147 05 5897192 5905587 Bva06g00493 06 5588463 5596160 BWGD
Bva05g01147 05 5897192 5905587 Bva05g01147 05 5897192 5905587 ECH