Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva05g01143 ATGATGCACCTATCCCTTTATCACCACCCTGGTCTCCTGGCCGCCCCTCAGATAGAGCCTATTTTGACTGGAAATCTGCCTCCTGACTTTGATTCAAGTACTTGCCGCAGTGTGTATGTTGGGAACATTCATCCCCGGGTTACAGATTCTCTTCTTCAAGAGATTTTATCTAGTACAGGTCCTATTGAAGGATGCAAGATCATTAGAAAAGAGAAGGACAATGTGTCTGCTTCATGCAATCTTCATGATGATGATCTGCTTTATGTTGTCATCTGCTGGCATCCTATGGTTTTATTTGGGCAGCCTATTAAAGTCAACTGGGCATATGCTAGCAGCCAGAGGGAGGATACATCAgAtcactataatatttttgttggtgATCTTACCCGGAGGTTACAGATGCTACACTTTTTGCTGGTTTTTCTGTATATCCAAGATGTTCAGATGCAAGGGTTCTGTGGGATCAGAAAACTAGAAAACTGGTCATTCCCGGggtttggttttgtttctttttggaaTCAACAGGAGGCTCAAGGTGctataaatgatttaaatgGAAAATGGCTGGGAAATAGACAGATTCGTTGTAGCTGGGCCACAAAAGGGGCTAATAATGGCAATGATGACAAGCAGAATTCAGATTCAGAAAGTGTTTGGGAGTTAACGAATGGAACATCTGAAGAAGGCCCAGAAAAGGCCAACGATGACAATCCGGAGATGAATCCTCAGTATACTACTGTCTATGTTGGCAATCTTGCTCCAGAGGTTACTTCTGTTCAACTCCACCATCTTTTTCATACTCTTGGTGCTGGAACAATTGAGGATGTTCGGGTGCAAAGAGATAAAGGTTTTGGGTTTGTTATATACAGTACACATGATGAAGCAGCTCTTGCTATACAGATCGGTAATGCTCGGGTCCTGTCTGGCAAACCTATCAAGTGCTCGTGGGGTAGCAAGCCTACTCCTCCAGGAACAGCGTCTACTCCTCTTCCCCCGTCTGCAGCTGCTCATATGCCAGTCTTTTCGGCATACGAAGGACAAATGGCTCTGAGCAAGATGGGTGGTGCTTATGCTCTTATGCATCAACATGGTCAGCATGCGCTGAAGCAGGCAGCCATGGGAATGGGTGCCCCTGCGGCTAGTTTTGGTGCTCTTGCAACTTCCCAGCACCTAATGTATTATCAGTA 1187 0.4339 MMHLSLYHHPGLLAAPQIEPILTGNLPPDFDSSTCRSVYVGNIHPRVTDSLLQEILSSTGPIEGCKIIRKEKDNVSASCNLHDDDLLYVVICWHPMVLFGQPIKVNWAYASSQREDTSDHYNIFVGDLTRRLQMLHFLLVFLYIQDVQMQGFCGIRKLENWSFPGFGFVSFWNQQEAQGAINDLNGKWLGNRQIRCSWATKGANNGNDDKQNSDSESVWELTNGTSEEGPEKANDDNPEMNPQYTTVYVGNLAPEVTSVQLHHLFHTLGAGTIEDVRVQRDKGFGFVIYSTHDEAALAIQIGNARVLSGKPIKCSWGSKPTPPGTASTPLPPSAAAHMPVFSAYEGQMALSKMGGAYALMHQHGQHALKQAAMGMGAPAASFGALATSQHLMYYQ 395
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva05g01143 395 SUPERFAMILY RNA-binding domain, RBD 237 323 IPR035979 GO:0003676
Bva05g01143 395 SUPERFAMILY RNA-binding domain, RBD 35 204 IPR035979 GO:0003676
Bva05g01143 395 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 245 319 IPR000504 GO:0003723
Bva05g01143 395 Gene3D - 115 218 IPR012677 -
Bva05g01143 395 CDD RRM3_TIA1_like 245 319 - -
Bva05g01143 395 SMART rrm1_1 246 315 IPR000504 GO:0003723
Bva05g01143 395 SMART rrm1_1 37 197 IPR000504 GO:0003723
Bva05g01143 395 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 121 201 IPR000504 GO:0003723
Bva05g01143 395 MobiDBLite consensus disorder prediction 200 244 - -
Bva05g01143 395 Gene3D - 223 323 IPR012677 -
Bva05g01143 395 Gene3D - 27 114 IPR012677 -
Bva05g01143 395 PANTHER NUCLEOLYSIN TIAR-LIKE PROTEIN 2 383 - -
Bva05g01143 395 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 2 383 - -
Bva05g01143 395 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 247 313 IPR000504 GO:0003723
Bva05g01143 395 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 38 72 IPR000504 GO:0003723
Bva05g01143 395 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 159 195 IPR000504 GO:0003723
Bva05g01143 395 MobiDBLite consensus disorder prediction 200 228 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva05g01143 Bva-Chr5 5879266 5884158 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva05g01143 28 319 Eukaryotic Initiation Factors Gene Family AT1G49760 24.092 7.97e-15 74.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva05g01143 K13201 - gmx:100813736 503.827
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva05g01143 05 5879266 5884158 Bva05g01143 05 5879266 5884158 ECH