Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva05g01142 ATGTCGAGCTCGTCGGAGTATTCGGAGTTTTCTAGCCAGAAGCCGACCAAGCTATCAGACAAGTCGACTTTCTCTCACACTTGTAGCTTGTTGAGTCAGTATCTCAAGGAGAGGGGTTCCTTTGGAGATCTAACTCTTGGGATGACATGCAACATCGAAGGAAGTGGTTCTCCTGAGACATCTTGTCAATCTACAACAACCATGAACTTGTTTCCTACCAAGGAAAACAACGTGACACCACTGCACCTAACAGCAGCTATGACTTCACTCCCTCGACAGGCTGCTTATCGTCCCCATTTCTCTGCAGAAGATATTCCAAACTTAGTAAATTCCAGTGAAATTCATTCTTTGACAAAGGAGCCTAAAACTGCACAATTGACAATCTTCTACGCTGGACAAGTTTTTGTGGTTGATGATTTTCCAGCTGAGAAAGCCAAAGAGATCATGTCTTTTGCCAGCAAAGGAAACACCCAAACCCAAAACACCTCTGCTTACACTTTCACTCAGAGCCAGCCTTCATTTCCTGCTAATTTGGCTAGAACCACCGTGGATTCCATTGCTCCAAATCCTTCTACGGTGAACATCAGTAGTTCCATTCAAGACCGGCCTCAAACACCATCCGGACCTGTCGTTTgtgATCTACCAATTGCAAGGAAAGCCTCACTTCACCGGTTCCTGGAGAAGAGAAAGGATAGGATTGCTGCTAAAGCACCATACCAAACAATCCCTAACAAATCAGCTGAATCTAAGTCGTCATGGCTGGGCTTGGCTCCTCAATCACCACAAATCTG 791 0.4513 MSSSSEYSEFSSQKPTKLSDKSTFSHTCSLLSQYLKERGSFGDLTLGMTCNIEGSGSPETSCQSTTTMNLFPTKENNVTPLHLTAAMTSLPRQAAYRPHFSAEDIPNLVNSSEIHSLTKEPKTAQLTIFYAGQVFVVDDFPAEKAKEIMSFASKGNTQTQNTSAYTFTQSQPSFPANLARTTVDSIAPNPSTVNISSSIQDRPQTPSGPVVCDLPIARKASLHRFLEKRKDRIAAKAPYQTIPNKSAESKSSWLGLAPQSPQI 263
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva05g01142 263 PANTHER PROTEIN TIFY 4A-RELATED-RELATED 17 257 IPR040390 -
Bva05g01142 263 Pfam Jas motif 215 240 IPR018467 -
Bva05g01142 263 MobiDBLite consensus disorder prediction 1 21 - -
Bva05g01142 263 MobiDBLite consensus disorder prediction 242 263 - -
Bva05g01142 263 PANTHER PROTEIN TIFY 10A 17 257 - -
Bva05g01142 263 Pfam tify domain 120 153 IPR010399 -
Bva05g01142 263 MobiDBLite consensus disorder prediction 236 263 - -
Bva05g01142 263 ProSiteProfiles Tify domain profile. 119 154 IPR010399 -
Bva05g01142 263 SMART tify_2 119 154 IPR010399 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva05g01142 Bva-Chr5 5876111 5878424 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva05g01142 1 257 Tify Gene Family AT1G19180 44.776 1.22e-55 177
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Tify Bva05g01142 tify 1e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva05g01142 K13464 - gmx:100801449 325.094
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva05g01142 05 5876111 5878424 Bva06g00499 06 5622023 5624234 BWGD
Bva05g01142 05 5876111 5878424 Bva05g01142 05 5876111 5878424 ECH