Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva05g01106 ATGAATGGAAGGAGTAGGTACCCTTTCACTCCTTCACAGTGGCAAGAACTTGAACATCAAGCTCTTATCTATAAGTACATGGCTTCAGGTATTCCCATTCCCTCTGATCTTCTCTTCAACATTAAAAGAAGCTGCTTGGATTCTCCTCTGTCTTCCACGCTCATGGCTCACCAGTCTCAACACTTTGCTTGGAACTATTTGCAGATAGGTTTGGGGAGAAAGATAGACCCAGAACCAGGGAGATGCAGAAGAACAGATGGGAAGAAATGGAGATGCTCAAAAGAAGCATACCCAGATTCCAAATACTGTGAGAGACACATGCATAGAGGAAAAAACCGTTCAAGAAAGCCTGTGGAAGTTTTGAAAACAGCACCGACAAATACAAATAACCCTTCAACCCATTCAATCTCATCAATCACGAAATATAATAGCCCTGCACTAACCCCAACCAGCCATTCCCTCTCGTCTCTTTCTTCAGTGTCCTCTGAGGCCCACCATCATCAACCCCAGCAACATTCTTGCTATGCTTCCCATcttcagcagcagcagcagcagcactCCTTTCTCTATTCAAGGCCTTCTTCAACTATAGGCTTGTCATTTCAAGACAACACTTCTGCTCCATTGTTCCTTGACTCTGCTTCGTACTCTCACAATAACACAGACTACAGGAACAGATATGTTTATGGGCTGAAAGAGGAGGTGGATGAGCATGCTTTCTTTACAGAGCCTTCTGGGAGTATGAAGAGCTTTTCTGCTTCATCCATGGATGATGCATGGCACTTCACACCACTGACAATGagttcttcctcttcttcaaaaCAGAGGAGTTGCTCTGCTTTGTCCAATGACTACTGTTACTTACAGCTCCAGAGCCTCaatgacaaaacaaaacagCCAGATCAAGAAGAACAAGGTTGCTATATTCTGGATGGTGATATGAAATGTGAAACACCAGTGAAATTGGGGAAACAAGAGCCTGAAAAAACCATTCATCGCTTCTTTGATGAATGGCCCCCCAAAAGCAGAGATTCTTGGCTTGATTTGGATGATAAATCCTCAACAACCCAACTTTCAATTTCCATTCCCACATCTTCTAATGATTTTCCAACCTTCAATTCCAGAACCCACAGAGATGGTTG 1142 0.4107 MNGRSRYPFTPSQWQELEHQALIYKYMASGIPIPSDLLFNIKRSCLDSPLSSTLMAHQSQHFAWNYLQIGLGRKIDPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGKNRSRKPVEVLKTAPTNTNNPSTHSISSITKYNSPALTPTSHSLSSLSSVSSEAHHHQPQQHSCYASHLQQQQQQHSFLYSRPSSTIGLSFQDNTSAPLFLDSASYSHNNTDYRYVYGLKEEVDEHAFFTEPSGSMKSFSASSMDDAWHFTPLTMSSSSSSKQRSCSALSNDYCYLQLQSLNDKTKQPDQEEQGCYILDGDMKCETPVKLGKQEPEKTIHRFFDEWPPKSRDSWLDLDDKSSTTQLSISIPTSSNDFPTFNSRTHRDG 378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva05g01106 378 PANTHER GROWTH-REGULATING FACTOR 5 3 354 - -
Bva05g01106 378 SMART QLQ_2 7 43 IPR014978 GO:0005524|GO:0005634|GO:0006355
Bva05g01106 378 MobiDBLite consensus disorder prediction 121 178 - -
Bva05g01106 378 MobiDBLite consensus disorder prediction 354 378 - -
Bva05g01106 378 Pfam QLQ 8 41 IPR014978 GO:0005524|GO:0005634|GO:0006355
Bva05g01106 378 MobiDBLite consensus disorder prediction 103 178 - -
Bva05g01106 378 MobiDBLite consensus disorder prediction 354 371 - -
Bva05g01106 378 ProSiteProfiles QLQ domain profile. 8 43 IPR014978 GO:0005524|GO:0005634|GO:0006355
Bva05g01106 378 Pfam WRC 77 119 IPR014977 -
Bva05g01106 378 ProSiteProfiles WRC domain profile. 76 120 IPR014977 -
Bva05g01106 378 PANTHER - 3 354 IPR031137 GO:0005634|GO:0006351|GO:0032502
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva05g01106 Bva-Chr5 5700687 5702822 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva05g01106 5 312 GRF Transcription Factor Family AT3G13960 38.095 1.29e-54 183
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRF Bva05g01106 WRC 8e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva05g01106 - - gmx:100783524 500.745
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva05g01106 05 5700687 5702822 Bva06g00539 06 5801973 5804171 BWGD
Bva05g01106 05 5700687 5702822 Bva05g01106 05 5700687 5702822 ECH