Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva05g01101 ATGGGGAGAAGCCCTTGTTGCTCAAAAGAGGGTTTGAACAGAGGTGCTTGGACTGCTCATGAAGACAAGATCCTCACTGATTACATCAAACTCCATGGTGAAGGAGGATGGAGAAACCTTCCCAAAAGAGCAGGTTTGAAGAGATGCGGCAAGAGTTGCAGGCTGAGATGGCTGAATTATCTTAGACCAGATATAAAGAGAGGCAATATCTCCCCAGATGAAGAAGAGCTTATTATCAGGCTTCACAAGCTGTTGGGTAACAGATGGTCTCTAATCGCAGGAAGGCTTCCAGGGCGAACagacaatgaaataaaaaactacTGGAATACCAACTTAGGCAAAAAGGTTAAAGACCATCACCAACCCAACAACACTTCATCTCGAAAACTCTCTGTTCAGCCAAATGAAAACAACTCAAAGCCAACAAAGCAGGAAGCCAAGGTTGTCCGTACAAAGGCAACAAAGTGCTCTAAGATATTCATAAACCCACCTCTTCACTCTTCATTCCAGTTCCAGAACAATTCATCaaacacaaaagaagaaacagtaGAAGCAGAGCCATTACCAGTGGATGCTTCTGCTGCAGTCACtaacaataatgataataacattTCAGCAGCTGGTTTCCAAATGGAACTTGACAAGTTCGATATTAATGGGTTTTTGTCGTTTAGTGCCGGAGAAGATCATGAACTTGGTCCAGATTTGCTGGTAGATTTTAACATGGGGGAGATATGCTTCTCTGATCTTCTCAACTCGGATTTAATCTCAGATGTACAGTGTGATTTCAGCAACAGTAACAATAACAGCCAAGAGCCATCGCTGTCTCCATCAGAAGAAGAGCCTTTGCTGTTCTCCGATGAGCTTCTCAAGGATTGGACTCAACTATTTTGCCGAAACAAATGTGGCTA 911 0.4105 MGRSPCCSKEGLNRGAWTAHEDKILTDYIKLHGEGGWRNLPKRAGLKRCGKSCRLRWLNYLRPDIKRGNISPDEEELIIRLHKLLGNRWSLIAGRLPGRTDNEIKNYWNTNLGKKVKDHHQPNNTSSRKLSVQPNENNSKPTKQEAKVVRTKATKCSKIFINPPLHSSFQFQNNSSNTKEETVEAEPLPVDASAAVTNNNDNNISAAGFQMELDKFDINGFLSFSAGEDHELGPDLLVDFNMGEICFSDLLNSDLISDVQCDFSNSNNNSQEPSLSPSEEEPLLFSDELLKDWTQLFCRNKCG 303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva05g01101 303 PANTHER TRANSCRIPTION FACTOR TT2 1 267 - -
Bva05g01101 303 MobiDBLite consensus disorder prediction 112 145 - -
Bva05g01101 303 Gene3D - 70 148 - -
Bva05g01101 303 CDD SANT 16 61 IPR001005 -
Bva05g01101 303 PANTHER TRANSCRIPTION FACTOR MYB51-LIKE ISOFORM X1 1 267 - -
Bva05g01101 303 SUPERFAMILY Homeodomain-like 12 108 IPR009057 -
Bva05g01101 303 Gene3D - 14 66 - -
Bva05g01101 303 MobiDBLite consensus disorder prediction 125 142 - -
Bva05g01101 303 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Bva05g01101 303 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Bva05g01101 303 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Bva05g01101 303 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Bva05g01101 303 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Bva05g01101 303 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Bva05g01101 303 CDD SANT 71 112 IPR001005 -
Bva05g01101 303 SMART sant 66 114 IPR001005 -
Bva05g01101 303 SMART sant 13 63 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva05g01101 Bva-Chr5 5676798 5678307 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva05g01101 1 186 MYB Transcription Factor Family AT4G38620 53.763 3.62e-62 197
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Bva05g01101 Myb_DNA-binding 6.3e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva05g01101 K09422 - gmx:100802704 337.806
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva06g00545 06 5835584 5837003 Bva05g01101 05 5676798 5678307 BWGD
Bva05g01101 05 5676798 5678307 Bva08g02091 08 13851000 13853172 ECH
Bva05g01101 05 5676798 5678307 Bva10g00511 10 4917721 4918773 ECH
Bva05g01101 05 5676798 5678307 Bva06g02276 06 14789692 14790505 ECH
Bva05g01101 05 5676798 5678307 Bva05g01101 05 5676798 5678307 ECH