Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva05g01100 ATGGGGAGAAGCCCTTGTTGCTCAAAAGAGGGTTTGAACAGAGGTGCTTGGACTGCTCATGAAGACAAGATCCTCACTGATTACATCAAACTCCATGGTGAAGGACGATGGAGAAACCTTCCCAAAAGAGCAGGTTTGAAGAGATGCGGCAAGAGTTGCAGGCTGAGATGGCTGAATTATCTTAGACCAGATATAAAGAGAGGCAATATCTCCCCAGATGAAGAAGAGCTTATTTTCAGGCTTCACAAGCTGTTGGGTAACAGATGGTCTCTAATCGCAGGAAGGCTTCCCGGGCGAACagacaatgaaataaaaaactacTGGAATACCAACTTAGGCAAAAAGGTTAAAGACCATCACCAACCCAACAACACATCTCGAAAACTCTCTGTTCAACCAAATGAAAACAACTCAAAGCCAACAAAGCGGGAAGCCAAGGTTGTCCGTACAAAGGCAACAAAGTGCTCTAAGATATTCATAAACCCACCTCTTCACTCTTCATTCCAGTTCCAGAACAATTCATCaaacacaaaagaagaaacagtaGAAGCAGAGCCATTACCAGTGGATGCTTCTGCTGCAGCCACtaacaataatgataataacattTCAGCAGCTGGTTTCCAAATGGAACTTGACAAGTTCGATATTAATGGGTTTTTGTCGTTTAGTGCCGGAGAAGAtcacgaacttggtccagatTTGCTGGTAGATTTTAACATGGGGGAGATATGCTTCTCTGATCTTCTCAACTCGGATTTAATCTCAGATGTACAGTGTGATTTCAGCAACAGTAACAATAACAGCCAAGAGCCATCGCTGTCTCATCAGAAGAAGAGCCCTTGCTGTTCTCCGATGAGCTTCTCAAGGATTGGACTCAACAATTTTGCCGAAACGAATGTGGCTAAGAGCCTTCATTCCTTCACTTCTTTGCTCGAGTCTTCTGAGGAAACATTAAATGaagaata 968 0.4029 MGRSPCCSKEGLNRGAWTAHEDKILTDYIKLHGEGRWRNLPKRAGLKRCGKSCRLRWLNYLRPDIKRGNISPDEEELIFRLHKLLGNRWSLIAGRLPGRTDNEIKNYWNTNLGKKVKDHHQPNNTSRKLSVQPNENNSKPTKREAKVVRTKATKCSKIFINPPLHSSFQFQNNSSNTKEETVEAEPLPVDASAAATNNNDNNISAAGFQMELDKFDINGFLSFSAGEDHELGPDLLVDFNMGEICFSDLLNSDLISDVQCDFSNSNNNSQEPSLSHQKKSPCCSPMSFSRIGLNNFAETNVAKSLHSFTSLLESSEETLNEE 322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva05g01100 322 PANTHER TRANSCRIPTION FACTOR TT2 1 271 - -
Bva05g01100 322 CDD SANT 16 61 IPR001005 -
Bva05g01100 322 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Bva05g01100 322 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Bva05g01100 322 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Bva05g01100 322 MobiDBLite consensus disorder prediction 114 144 - -
Bva05g01100 322 SUPERFAMILY Homeodomain-like 12 108 IPR009057 -
Bva05g01100 322 SMART sant 66 114 IPR001005 -
Bva05g01100 322 SMART sant 13 63 IPR001005 -
Bva05g01100 322 Gene3D - 14 66 - -
Bva05g01100 322 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Bva05g01100 322 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Bva05g01100 322 CDD SANT 71 112 IPR001005 -
Bva05g01100 322 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Bva05g01100 322 Gene3D - 70 148 - -
Bva05g01100 322 PANTHER TRANSCRIPTION FACTOR MYB51-LIKE ISOFORM X1 1 271 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva05g01100 Bva-Chr5 5661552 5662740 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva05g01100 1 132 MYB Transcription Factor Family AT4G09460 64.493 1.56e-61 194
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Bva05g01100 Myb_DNA-binding 5.8e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva05g01100 K09422 - gmx:100802704 336.65
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva05g01100 05 5661552 5662740 Bva08g02092 08 13857694 13858718 ECH
Bva05g01100 05 5661552 5662740 Bva02g02231 02 22364613 22366332 ECH
Bva05g01100 05 5661552 5662740 Bva10g00513 10 4921834 4923144 ECH
Bva05g01100 05 5661552 5662740 Bva05g01100 05 5661552 5662740 ECH