Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva05g01095 ATGGCGACTCAGATGAGCAAGAAGAGAAAGTTCGTAGCCGATGGAGTTTTCTTCGCCGAGCTGAATGAGGTTCTGACCAGAGAGCTTGCTGAAGATGGGTATTCAGGTGTTGAGGTTAGAGTTACCCCGATGCGCACAGAGATCATTATCAGGGCCACTCGAACTCAGAATGTACTAGGCGAGAAAGGTAGGAGAATTAGGGAGCTGACCTCAGTGGTACAAAAGAGATTTAAGTTTCCGGAGAACAGTGTCGAGCTTTATGCCGAAAAGGTCAACAACAGGGGTCTTTGCGCCATTGCCCAGGCTGAGTCTCTTCGCTACAAGCTTCTTGGTGGTCTCGCTGTACGGAGGGCCTGCTATGGTGTTCTGAGGTTCATTATGGAAAGTGGTGCCAAGGGTTGCGAGGTGATTGTTAGTGGAAAACTGAGGGCCCAAAGAGCCAAGTCCATGAAGTTCAAAGATGGGTATATGATTTCTTCTGGGCAACCAGTCAAGGATTACATTGACTCTGCCGTAAGACATGTACTTCTTAGACAGGGTGTTCTTGGTATCAAGGTGAAGATCATGCTTGATTGGGATCCCAAAGGAAAGCAGGGTCCCAAAACGCCTCTTCCTGATATTGTCACAATCCACCCTccaaaggaggaagaagaattcATTCGACCTTCGGCTCCTGCTGTTTATCCAACTGACATTGAGGTTCCAGTTCCTGTTCCCGTGGCTTA 725 0.4703 MATQMSKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVKDYIDSAVRHVLLRQGVLGIKVKIMLDWDPKGKQGPKTPLPDIVTIHPPKEEEEFIRPSAPAVYPTDIEVPVPVPVA 241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva05g01095 241 TIGRFAM uS3_euk_arch: ribosomal protein uS3 8 210 IPR005703 GO:0003735|GO:0006412|GO:0015935
Bva05g01095 241 CDD 40S_S3_KH 15 95 - -
Bva05g01095 241 Pfam Ribosomal protein S3, C-terminal domain 106 188 IPR001351 GO:0003735|GO:0006412
Bva05g01095 241 ProSiteProfiles Type-2 KH domain profile. 21 92 IPR004044 GO:0003723
Bva05g01095 241 PANTHER 40S RIBOSOMAL PROTEIN S3-RELATED 3 234 - -
Bva05g01095 241 Gene3D - 1 91 IPR015946 -
Bva05g01095 241 PANTHER 30S/40S RIBOSOMAL PROTEIN S3 3 234 - -
Bva05g01095 241 SUPERFAMILY Prokaryotic type KH domain (KH-domain type II) 10 99 IPR009019 GO:0003723
Bva05g01095 241 ProSitePatterns Ribosomal protein S3 signature. 147 183 IPR018280 -
Bva05g01095 241 Gene3D - 93 219 IPR036419 -
Bva05g01095 241 SUPERFAMILY Ribosomal protein S3 C-terminal domain 93 191 IPR036419 -
Bva05g01095 241 Pfam KH domain 20 93 IPR004044 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva05g01095 Bva-Chr5 5615540 5618216 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva05g01095 1 223 Cytoplasmic Ribosomal Protein Gene Family AT5G35530 89.686 2.42e-151 419
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva05g01095 K02985 - mnt:21409977 450.284
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva05g01095 05 5615540 5618216 Bva08g02096 08 13874144 13876807 ECH
Bva05g01095 05 5615540 5618216 Bva02g02238 02 22393090 22395528 ECH
Bva05g01095 05 5615540 5618216 Bva05g01095 05 5615540 5618216 ECH