Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva05g01091 ATGGGTGATCTGCTAAACCCCTCCGCAATCTCACCACCTCCTCCTCCATCTCCTTCCCCAAAATCCAAGTTGCCCATGTTGTATTATGGCCTAGTAGTGGTGGGGACCGCTGCTATAGTGTTGGTTATATACAATTTCATCGTCGTCAAACGTTGTAGCAGGCGTCAAATGCAGTCGCGGGCTTCTGGGTCAAATCGAATGGCGGTTGAGGTTGCAACAAGTAGGAGTTTTGATAGCTCAAATAGGACCTTGCTTTCAAGCTTCAAGTACAAGAAAGAGCAGCAACATGGTGGTGATGGTGTTGCCGCGGATTATGAATGCCCAGTTTGTTTATCAGTTTTTGAAGAAGGGGAGCAAGTGACCAAACTGCCGCGCTGCAACCACTCTTTCCATTCGCCTTGTATAAGCATGTGGCTTTACTCTCACTTCGATTGCCCAATTTGTCGAACACCTGTTGGGCCTTTTGGTGCTCGACGTTTTCCACCGGTGAGTCAGTCGCCGGCGGAGAATTCTCGTGAAGGGTTGCTGGAATCCGGCGTAGGCAATTG 548 0.4945 MGDLLNPSAISPPPPPSPSPKSKLPMLYYGLVVVGTAAIVLVIYNFIVVKRCSRRQMQSRASGSNRMAVEVATSRSFDSSNRTLLSSFKYKKEQQHGGDGVAADYECPVCLSVFEEGEQVTKLPRCNHSFHSPCISMWLYSHFDCPICRTPVGPFGARRFPPVSQSPAENSREGLLESGVGN 182
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva05g01091 182 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 79 153 IPR013083 -
Bva05g01091 182 MobiDBLite consensus disorder prediction 160 182 - -
Bva05g01091 182 ProSiteProfiles Zinc finger RING-type profile. 107 149 IPR001841 -
Bva05g01091 182 Pfam Ring finger domain 106 149 IPR001841 -
Bva05g01091 182 MobiDBLite consensus disorder prediction 1 20 - -
Bva05g01091 182 SMART ring_2 107 148 IPR001841 -
Bva05g01091 182 PANTHER RING-H2 FINGER PROTEIN ATL52-LIKE 9 177 - -
Bva05g01091 182 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 9 177 IPR044675 -
Bva05g01091 182 SUPERFAMILY RING/U-box 106 155 - -
Bva05g01091 182 CDD RING-H2_EL5_like 106 149 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva05g01091 Bva-Chr5 5601354 5602418 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva05g01091 31 152 C3H Transcription Factor Family AT5G17600 37.121 2.38e-22 90.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva05g01091 - - aprc:113852327 206.838
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva05g01091 05 5601354 5602418 Bva06g00552 06 5875992 5877532 BWGD
Bva05g01091 05 5601354 5602418 Bva05g01091 05 5601354 5602418 ECH