Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva05g01047 ATGGAGGCTGTCTTCTCCCTCTCAGAGGCCGCCAGGATGGATTTCCTGCGTTCTATGGGGCAGTCTTCTGGCTGCGCTTACATTTGTCTCTGGTCATATGATTCCCTTTCATCCAATCGTTTGTTGTTCTTGGATGGATTCTACAACGCAAGCACCAACCAACCTAGCACTTCTTCGGTGATCACTGTTGGTCAGAGtctttttaaccaatttaggGGATTGGCGTTTGATATCAATGACAACCATGTTCCTGGGCTGGCTATCAGGACCAATCGCAACATAGAATTGCAACAAGGGGATCTTCTAAGGCTTGCATGGACAGAAATACAAAAGCAAAACCTAAAAATTCTAAGCCATTATTCTGATTTACAGACAGCTGTTTTCATGGGGAGCAACAAAGGAGAAATTGAACTCGGGTTCTCAACTATGTCTCAAGATTACGTTCAAACAGCACTGAGGAATATGTTCCCAGCTGATGATTTATCTCTATCGCAACAAGCACAACTTATTGATCAGAACccaccatcatcatcatcatcatctttgaAATCATTATCAGATAGCCCAGAATACCCATCCCTCCTATTCAATATTCCAGGAACATCCCACATCCCTGAAACCCTTGGAGGGGTTCCTATAATGCAGCCAGCACCAGTTTCTACCTCCACAGTTAATAGCCCTCACCAAGCAGCTATCCATCAAGCATTAGCTCAAGTCACTCAAATTCAATTCCCCACACCAGAGAGTGAAAATGATGCAATGATGAGGGCAATTCTTCATGTTTTATCTTCTAATGCACCTTCTTCTTCTACTACTTCTCATCACCAAACCCATCAAGATTTACCATACTCTTCTGTGATCCATCTACAGTCTAGTGCTTTCAAGAGGTATAGGCCAGGTTTAGGCCCCGTTTTCACATCACAAATGGCCACCAATTTGCGCAGACAAAGCCTGTTGAAGAGATCGTTTGCGTTATTCAGAAACTTAAACATAATGAGATTGAGAGAACGTAGTTTTCAAACAACTCGTCCCACTAGCACTCAGCTGCATCACATGATATCAGAGCGGAGAAGACGcgaaaaaatcaatgaaaactTTCGGGCACTTAGAACACTACTTCCTCCAGGAACTAAGAAAGACAAAGCTTCAATACTCACAGCAGCGAAGGAGACATTGAGCTCATTGAAAGCTGAAATAGAAAAGCTTAGCCAAAGAAACCTGCAGTTGGAATCAGTTTTGCCAGCCAAAGAAGCTAATgctgaagaaacaaaaactagTTCCTCAGGAGAAAGACTAACTGTTGGAGTTTTGCATGTTCCAGAATCAAGCTCATCACAAGAGCGAATGGTAGACTTGCAAGTGGTTGTGAGAGGACAAAGCACCCAAGCTGATATATTGAGTCGCTTATTGGAATTCATAAGGCAAGATCGGAACGTAAGCTTGATTTCTATACACGCTAACACCCATATGGCAGAAGGGACTGCTCTCAACCATGTTCATTTCAGACTAAGGATTGAGGAAAGTGATTGGGACGAGTCTGCCTTCCAGGAAGCAGTGAGAAGAGTGGTTGCTGACCTGGCACAGTG 1586 0.4155 MEAVFSLSEAARMDFLRSMGQSSGCAYICLWSYDSLSSNRLLFLDGFYNASTNQPSTSSVITVGQSLFNQFRGLAFDINDNHVPGLAIRTNRNIELQQGDLLRLAWTEIQKQNLKILSHYSDLQTAVFMGSNKGEIELGFSTMSQDYVQTALRNMFPADDLSLSQQAQLIDQNPPSSSSSSLKSLSDSPEYPSLLFNIPGTSHIPETLGGVPIMQPAPVSTSTVNSPHQAAIHQALAQVTQIQFPTPESENDAMMRAILHVLSSNAPSSSTTSHHQTHQDLPYSSVIHLQSSAFKRYRPGLGPVFTSQMATNLRRQSLLKRSFALFRNLNIMRLRERSFQTTRPTSTQLHHMISERRRREKINENFRALRTLLPPGTKKDKASILTAAKETLSSLKAEIEKLSQRNLQLESVLPAKEANAEETKTSSSGERLTVGVLHVPESSSSQERMVDLQVVVRGQSTQADILSRLLEFIRQDRNVSLISIHANTHMAEGTALNHVHFRLRIEESDWDESAFQEAVRRVVADLAQ 528
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva05g01047 528 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 346 395 IPR011598 GO:0046983
Bva05g01047 528 CDD bHLH_AtbHLH_like 351 403 IPR045239 -
Bva05g01047 528 Pfam Helix-loop-helix DNA-binding domain 350 395 IPR011598 GO:0046983
Bva05g01047 528 Gene3D - 345 420 IPR036638 GO:0046983
Bva05g01047 528 PANTHER TRANSCRIPTION FACTOR BHLH041-RELATED 1 526 - -
Bva05g01047 528 SMART finulus 352 401 IPR011598 GO:0046983
Bva05g01047 528 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 344 412 IPR036638 GO:0046983
Bva05g01047 528 PANTHER TRANSCRIPTION FACTOR BHLH041-RELATED-RELATED 1 526 IPR044658 -
Bva05g01047 528 Coils Coil 385 412 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva05g01047 Bva-Chr5 5392082 5395200 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva05g01047 1 527 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G56960 38.462 1.04e-88 280
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Bva05g01047 HLH 2.1e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva05g01047 - - gmx:100807098 561.222
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva05g01047 05 5392082 5395200 Bva06g00593 06 6102103 6105696 BWGD
Bva05g01047 05 5392082 5395200 Bva05g01047 05 5392082 5395200 ECH