Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva05g01038 ATGTACTATGCTCGCGAACCCTATTCTAATGTTGATGCTGTGCATGTGACTCGCTTCATAGGGCTTGCTTCTGTTGGAAATAGAGAGAAGCAGAAATTTATTCATGCAATTTCCCCCACTCCAGCATCCACCATGTCTTCTGTTGAAGTTGCCATGAAACCTCCTAATACAACCTTATCGCCGTACATGATTGAGGAGAAAATGCCTTCTGCGAAGGATGCCACTAAGAGATCTAGTGATAATGTCTCAGATCCTCAATATTGGAGATATGATCTTTCTCAAAAGCGTCAGAAACATGGAGCTGGAGATGGTGACAAActgtgttttaaatttttatcttccgGCTCTTGTCCACGGGGAGACAAGTGCAATTTTCAACATGACATAGATGCAAAGGAACAGTATCAGAGAGgtgtttgttttgattttctgaaCAAGGGAAAATGTGAAAGGGGTCCAGATTGCAACTTTAAGCACAGCTTGCAGGATGAAGACAATAACCATACTCAAAGGAGGTCCAGATCTGAAAATAATAGCTCCAACAGATCAAAAGAGTGCTGGTTTTGCTTGTCAAGCCCCAATGTGGAGTCACATCTGATCGTCAGCATTGGAGAAAATTACTACTGTGCACTGGCTAAAGGTCCACTTGTTGAAGACCATGTGCTGTTAATACCTGTTGAGCATATGCCCAGTACCTTATCTATGTTGCCAGAATCTGAAATTGAGTTCTGTAGATTCCAGAATAGTCTCAAGATGTACTGTAATAAACAAGGAAAGGAAGTCATCTTTTTTGAGTGGGCTTCAAGGCGCAGCACTCATGCCAATGTTCAGGTCGTTCCTATCCCACCTTCCAAAGCAAATATGgttgaaaaaatattcaatttagcTGCAGATAAGTTGGGATTTAAATTTGTGGCAAAGAAATTTGATAGCAGTTCTGAcggaagaaattttttgaagacACAAATAGATAGAAATTCAAGTTTGTTCTATGCTGAACTCTCAGGAGGCATAATACTTTTGCATGTTGTTAATGAGAACGAGAGATTTCCAGCCCAATTTGGACGTGAGgTTGTGGCAGGGTTGCTGAATATGGCAGATAAGGCTGATTGGAGGAATTGTAAATATAGCAAGGAGGAAGAGACAAAGATGGTCGAAGACTTCAAGAGTCGATTTCAAAAATATGATCCGAACTGTTG 1199 0.3845 MYYAREPYSNVDAVHVTRFIGLASVGNREKQKFIHAISPTPASTMSSVEVAMKPPNTTLSPYMIEEKMPSAKDATKRSSDNVSDPQYWRYDLSQKRQKHGAGDGDKLCFKFLSSGSCPRGDKCNFQHDIDAKEQYQRGVCFDFLNKGKCERGPDCNFKHSLQDEDNNHTQRRSRSENNSSNRSKECWFCLSSPNVESHLIVSIGENYYCALAKGPLVEDHVLLIPVEHMPSTLSMLPESEIEFCRFQNSLKMYCNKQGKEVIFFEWASRRSTHANVQVVPIPPSKANMVEKIFNLAADKLGFKFVAKKFDSSSDGRNFLKTQIDRNSSLFYAELSGGIILLHVVNENERFPAQFGREVVAGLLNMADKADWRNCKYSKEEETKMVEDFKSRFQKYDPNC 399
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva05g01038 399 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 106 128 IPR000571 GO:0046872
Bva05g01038 399 MobiDBLite consensus disorder prediction 160 181 - -
Bva05g01038 399 PANTHER CWF19, CELL CYCLE CONTROL PROTEIN 2 398 IPR040194 -
Bva05g01038 399 SUPERFAMILY CCCH zinc finger 134 163 IPR036855 GO:0046872
Bva05g01038 399 SUPERFAMILY CCCH zinc finger 106 131 IPR036855 GO:0046872
Bva05g01038 399 SMART c3hfinal6 104 129 IPR000571 GO:0046872
Bva05g01038 399 SMART c3hfinal6 136 161 IPR000571 GO:0046872
Bva05g01038 399 ProSiteProfiles Zinc finger C3H1-type profile. 102 130 IPR000571 GO:0046872
Bva05g01038 399 MobiDBLite consensus disorder prediction 160 179 - -
Bva05g01038 399 ProSiteProfiles Zinc finger C3H1-type profile. 134 162 IPR000571 GO:0046872
Bva05g01038 399 Gene3D - 159 303 IPR036265 -
Bva05g01038 399 PANTHER CWF19-LIKE PROTEIN 1 2 398 - -
Bva05g01038 399 Pfam Protein similar to CwfJ C-terminus 1 176 293 IPR006768 -
Bva05g01038 399 Gene3D - 91 158 - -
Bva05g01038 399 Pfam Protein similar to CwfJ C-terminus 2 316 396 IPR006767 -
Bva05g01038 399 SUPERFAMILY HIT-like 178 283 IPR036265 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva05g01038 106 165 C3H Transcription Factor Family AT1G68200 34.848 2.13e-06 47.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Bva05g01038 CwfJ_C_1 6.1e-38 CL0265