Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva05g01030 ATGATGATACCTTCTTACCGTTGTTCACTGTCTTCTGCTATGCCTTTAGATCTTAATGAAGATCAAAACCATCTTGTCAGTCCTACCCATCAAgcctcttcttcatcttcttctctatCATATCCTGTTGTCTTCAACCCAGATCATGAACAAGATCAAGCAAGATCTTGCTACTGGGAAGTAAATCCCTCACAAAGTGATGAAGAGGCTGAGAAAACTGTTCCTTCAAGTGGATCGTGGGATCATCCCGCAGAAGAAAAGGATGAGAGCAAGAATGGCCTCAAGCTCAAACTTTGGAACAAAGAAGATGGGACTGAAAATGATAAAGCTGACGAAGAGGATGGTTCACTGAAGTGGCTGCCTTCAAAGATAAGGATCATaaggaagatgatgatggGATCGGATCAAAGGTGTTCTGAATCTTCTGATACAGCAGTCAATTCTATGAACAAGTTTGAAGATCAGACACAACCATCATCCCCACCAGCGGCCACTGAGGACAATAGTAGCAATATTACTTCACACAACAGTAATATCACTGTTAGGGTTTGTGCTGATTGCCATACCACTAAGACCCCTCTTTGGAGGAGTGGACCTAGAGGTCCAAAgTCACTTTGCAATGCTTGTGGGATTCGACAAAGGAAGGCAAGACGTGCGATGGCTGTAGCTGCAGCATCGGAGAATGGCACAATTCTTGCGGCCGAGACATCTTCTGCCAAGGGGAATCCTAAGTTGCACCAACACAACAAAGAGAAGAAGTTGAAAGGAGGGCGTGCACCACAGATGAAAAGGAAGCGAAAGCTTAAAAGCACGGCCAAGCCAATATGTCGAGGCAGAAAGAAGTTTTCTTTCGAGGATTTTGCAATAAAGTTGAGCAACAACTTGGCTCTCCAGCAACTGGTTTTCCCTCAGGATGAGAAGGAAGCGGCCATCTTACTCATGTCTCTATCCTATGGCCTCCTTCATGGATG 971 0.4295 MMIPSYRCSLSSAMPLDLNEDQNHLVSPTHQASSSSSSLSYPVVFNPDHEQDQARSCYWEVNPSQSDEEAEKTVPSSGSWDHPAEEKDESKNGLKLKLWNKEDGTENDKADEEDGSLKWLPSKIRIIRKMMMGSDQRCSESSDTAVNSMNKFEDQTQPSSPPAATEDNSSNITSHNSNITVRVCADCHTTKTPLWRSGPRGPKSLCNACGIRQRKARRAMAVAAASENGTILAAETSSAKGNPKLHQHNKEKKLKGGRAPQMKRKRKLKSTAKPICRGRKKFSFEDFAIKLSNNLALQQLVFPQDEKEAAILLMSLSYGLLHG 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva05g01030 323 MobiDBLite consensus disorder prediction 62 99 - -
Bva05g01030 323 MobiDBLite consensus disorder prediction 238 272 - -
Bva05g01030 323 ProSiteProfiles GATA-type zinc finger domain profile. 182 214 IPR000679 GO:0006355|GO:0043565
Bva05g01030 323 MobiDBLite consensus disorder prediction 26 44 - -
Bva05g01030 323 MobiDBLite consensus disorder prediction 246 272 - -
Bva05g01030 323 PANTHER GATA TRANSCRIPTION FACTOR 22-RELATED 2 323 - -
Bva05g01030 323 SMART GATA_3 178 231 IPR000679 GO:0006355|GO:0043565
Bva05g01030 323 ProSitePatterns GATA-type zinc finger domain. 184 209 IPR000679 GO:0006355|GO:0043565
Bva05g01030 323 Pfam GATA zinc finger 184 217 IPR000679 GO:0006355|GO:0043565
Bva05g01030 323 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 180 218 - -
Bva05g01030 323 MobiDBLite consensus disorder prediction 81 99 - -
Bva05g01030 323 PANTHER GATA TRANSCRIPTION FACTOR 21-LIKE 2 323 - -
Bva05g01030 323 CDD ZnF_GATA 183 213 IPR000679 GO:0006355|GO:0043565
Bva05g01030 323 MobiDBLite consensus disorder prediction 26 45 - -
Bva05g01030 323 MobiDBLite consensus disorder prediction 150 174 - -
Bva05g01030 323 Gene3D - 176 236 IPR013088 GO:0006355|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva05g01030 Bva-Chr5 5277797 5279394 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva05g01030 95 323 C2C2-Gata Transcription Factor Family AT4G26150 37.849 2.31e-32 121
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Bva05g01030 GATA 4.2e-17 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva05g01030 - - gmx:100792098 320.857
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva05g01030 05 5277797 5279394 Bva06g00609 06 6207829 6209617 BWGD
Bva05g01030 05 5277797 5279394 Bva05g01030 05 5277797 5279394 ECH