Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Bva05g01025 | ATGGGTGGTCGAGCTTCTTTCAAGCCCTTCGCAATCAGATATTTTTCCTCCGCCTTCATCTTCACCGCCATCATTCTCCTTCGCCCCTGGTTTCATGCAGAGGCTGATGATTCCAGAGAAACGCCTCCCAATGTTAAAAATGTTGGTGGTGTTGCCAATGGCGACTCTCCGACTCCCTCGACACTTGCCGTGCCAGAGCCGGGGACAACTGGTCAACagaaattccatttttttaatcccaGCGTAGCCGTTGTAGTGGGCGTTCTGACTAGCATGCTTTCTCTCACCTTTCTCCTGCTTCTCTATGCCAAACACTGCAAGCGTGGGAATGCTGCTGCCCTCCCTGGGTTTAGGAGAAACCAAAATTCAAGAGGGCCACCACCTTCCGCCGCAAGGAAGAACTCAGGGATCAACCGCGGCGTGATTGAGTCCTTACCCATTTTCAGATTCGGATCGCTGAGCGGGGAAAAGGATGGCCTCGAATGTGCTGTTTGCCTCACAAGGTTTGAATCCACGGACGTTCTCAGATTGCTTCCCAAATGCAAACACGCCTTCCACGTTGAATGCGTGGATACATGGCTGGACGCACATTCCACTTGCCCGCTCTGTCGCTGCAGGGTCGACCCGGAAGACATTCTTCTCGTGGAAGACGATAAGATCTTGCGCAATAATCAACCAATTCCGGCCGTGCAAGAAGATCATGACCCGGAAGAAACTGACATCGAAGCCGGAACAAACGGGTTGGACCCAGAGTCAAACCACGGTCTTCGTCGAGTCTCGGGGAGACACTCGTCCGCTTTCGAAAGAGGGTTGTTGCAGATAATTATGGGGAGAGCAACGGGGAAGGAGCCGGAACGCGAAGCAGTTGGGCACGAAACGACGTCGCGCAGACGGTCTCTGGACAGCGCGGGCACGCCTTACCGCACGAGAAGAAACAGCGAACCCGTAGCGGTGGATTGCTTCGAGCGCCCCAGAAGAGACGGGCTGTTGTTGAGCCAGGACAAGACAAGAAATTTGGAGCATAGATTGGAGCACCGGATCATTGTCTCCCCGTCCCCAAAATCCAATGGGCTCCACCAGCATCGATGGAGCGACGTACAGGCGTCAGATCTGCTTTATCTAACATCGGAGAAGATCATCAGCGACAGTCGTAGTAGAATGTCGTCGTCATCCGCATCAGCGGGATCTAGACGATCAGCATCGCGGGTGCAGCGGCAGAATGTGCAGCTGGCGTTGCACCGGAACACTCGGAGAGGAGGAACAGTAGGGATGGCAGAGGCGTA | 1283 | 0.5362 | MGGRASFKPFAIRYFSSAFIFTAIILLRPWFHAEADDSRETPPNVKNVGGVANGDSPTPSTLAVPEPGTTGQQKFHFFNPSVAVVVGVLTSMLSLTFLLLLYAKHCKRGNAAALPGFRRNQNSRGPPPSAARKNSGINRGVIESLPIFRFGSLSGEKDGLECAVCLTRFESTDVLRLLPKCKHAFHVECVDTWLDAHSTCPLCRCRVDPEDILLVEDDKILRNNQPIPAVQEDHDPEETDIEAGTNGLDPESNHGLRRVSGRHSSAFERGLLQIIMGRATGKEPEREAVGHETTSRRRSLDSAGTPYRTRRNSEPVAVDCFERPRRDGLLLSQDKTRNLEHRLEHRIIVSPSPKSNGLHQHRWSDVQASDLLYLTSEKIISDSRSRMSSSSASAGSRRSASRVQRQNVQLALHRNTRRGGTVGMAEA | 427 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Bva05g01025 | 427 | CDD | RING-H2_EL5_like | 161 | 204 | - | - | |
Bva05g01025 | 427 | Pfam | Ring finger domain | 161 | 204 | IPR001841 | - | |
Bva05g01025 | 427 | MobiDBLite | consensus disorder prediction | 117 | 136 | - | - | |
Bva05g01025 | 427 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 137 | 211 | IPR013083 | - | |
Bva05g01025 | 427 | MobiDBLite | consensus disorder prediction | 280 | 298 | - | - | |
Bva05g01025 | 427 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE ATL42 | 58 | 397 | - | - | |
Bva05g01025 | 427 | SUPERFAMILY | RING/U-box | 139 | 209 | - | - | |
Bva05g01025 | 427 | PANTHER | RING-H2 FINGER PROTEIN ATL43 | 58 | 397 | - | - | |
Bva05g01025 | 427 | MobiDBLite | consensus disorder prediction | 382 | 414 | - | - | |
Bva05g01025 | 427 | MobiDBLite | consensus disorder prediction | 38 | 59 | - | - | |
Bva05g01025 | 427 | SMART | ring_2 | 162 | 203 | IPR001841 | - | |
Bva05g01025 | 427 | MobiDBLite | consensus disorder prediction | 229 | 253 | - | - | |
Bva05g01025 | 427 | ProSiteProfiles | Zinc finger RING-type profile. | 162 | 204 | IPR001841 | - | |
Bva05g01025 | 427 | MobiDBLite | consensus disorder prediction | 382 | 427 | - | - | |
Bva05g01025 | 427 | MobiDBLite | consensus disorder prediction | 280 | 311 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Bva05g01025 | Bva-Chr5 | 5260780 | 5262706 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Bva05g01025 | 80 | 384 | C3H Transcription Factor Family | AT5G05810 | 50.789 | 3.13e-75 | 238 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Bva05g01025 | K19041 | - | jre:109009455 | 337.421 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Bva05g01025 | 05 | 5260780 | 5262706 | Bva05g01025 | 05 | 5260780 | 5262706 | ECH |