Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva05g01025 ATGGGTGGTCGAGCTTCTTTCAAGCCCTTCGCAATCAGATATTTTTCCTCCGCCTTCATCTTCACCGCCATCATTCTCCTTCGCCCCTGGTTTCATGCAGAGGCTGATGATTCCAGAGAAACGCCTCCCAATGTTAAAAATGTTGGTGGTGTTGCCAATGGCGACTCTCCGACTCCCTCGACACTTGCCGTGCCAGAGCCGGGGACAACTGGTCAACagaaattccatttttttaatcccaGCGTAGCCGTTGTAGTGGGCGTTCTGACTAGCATGCTTTCTCTCACCTTTCTCCTGCTTCTCTATGCCAAACACTGCAAGCGTGGGAATGCTGCTGCCCTCCCTGGGTTTAGGAGAAACCAAAATTCAAGAGGGCCACCACCTTCCGCCGCAAGGAAGAACTCAGGGATCAACCGCGGCGTGATTGAGTCCTTACCCATTTTCAGATTCGGATCGCTGAGCGGGGAAAAGGATGGCCTCGAATGTGCTGTTTGCCTCACAAGGTTTGAATCCACGGACGTTCTCAGATTGCTTCCCAAATGCAAACACGCCTTCCACGTTGAATGCGTGGATACATGGCTGGACGCACATTCCACTTGCCCGCTCTGTCGCTGCAGGGTCGACCCGGAAGACATTCTTCTCGTGGAAGACGATAAGATCTTGCGCAATAATCAACCAATTCCGGCCGTGCAAGAAGATCATGACCCGGAAGAAACTGACATCGAAGCCGGAACAAACGGGTTGGACCCAGAGTCAAACCACGGTCTTCGTCGAGTCTCGGGGAGACACTCGTCCGCTTTCGAAAGAGGGTTGTTGCAGATAATTATGGGGAGAGCAACGGGGAAGGAGCCGGAACGCGAAGCAGTTGGGCACGAAACGACGTCGCGCAGACGGTCTCTGGACAGCGCGGGCACGCCTTACCGCACGAGAAGAAACAGCGAACCCGTAGCGGTGGATTGCTTCGAGCGCCCCAGAAGAGACGGGCTGTTGTTGAGCCAGGACAAGACAAGAAATTTGGAGCATAGATTGGAGCACCGGATCATTGTCTCCCCGTCCCCAAAATCCAATGGGCTCCACCAGCATCGATGGAGCGACGTACAGGCGTCAGATCTGCTTTATCTAACATCGGAGAAGATCATCAGCGACAGTCGTAGTAGAATGTCGTCGTCATCCGCATCAGCGGGATCTAGACGATCAGCATCGCGGGTGCAGCGGCAGAATGTGCAGCTGGCGTTGCACCGGAACACTCGGAGAGGAGGAACAGTAGGGATGGCAGAGGCGTA 1283 0.5362 MGGRASFKPFAIRYFSSAFIFTAIILLRPWFHAEADDSRETPPNVKNVGGVANGDSPTPSTLAVPEPGTTGQQKFHFFNPSVAVVVGVLTSMLSLTFLLLLYAKHCKRGNAAALPGFRRNQNSRGPPPSAARKNSGINRGVIESLPIFRFGSLSGEKDGLECAVCLTRFESTDVLRLLPKCKHAFHVECVDTWLDAHSTCPLCRCRVDPEDILLVEDDKILRNNQPIPAVQEDHDPEETDIEAGTNGLDPESNHGLRRVSGRHSSAFERGLLQIIMGRATGKEPEREAVGHETTSRRRSLDSAGTPYRTRRNSEPVAVDCFERPRRDGLLLSQDKTRNLEHRLEHRIIVSPSPKSNGLHQHRWSDVQASDLLYLTSEKIISDSRSRMSSSSASAGSRRSASRVQRQNVQLALHRNTRRGGTVGMAEA 427
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva05g01025 427 CDD RING-H2_EL5_like 161 204 - -
Bva05g01025 427 Pfam Ring finger domain 161 204 IPR001841 -
Bva05g01025 427 MobiDBLite consensus disorder prediction 117 136 - -
Bva05g01025 427 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 137 211 IPR013083 -
Bva05g01025 427 MobiDBLite consensus disorder prediction 280 298 - -
Bva05g01025 427 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 58 397 - -
Bva05g01025 427 SUPERFAMILY RING/U-box 139 209 - -
Bva05g01025 427 PANTHER RING-H2 FINGER PROTEIN ATL43 58 397 - -
Bva05g01025 427 MobiDBLite consensus disorder prediction 382 414 - -
Bva05g01025 427 MobiDBLite consensus disorder prediction 38 59 - -
Bva05g01025 427 SMART ring_2 162 203 IPR001841 -
Bva05g01025 427 MobiDBLite consensus disorder prediction 229 253 - -
Bva05g01025 427 ProSiteProfiles Zinc finger RING-type profile. 162 204 IPR001841 -
Bva05g01025 427 MobiDBLite consensus disorder prediction 382 427 - -
Bva05g01025 427 MobiDBLite consensus disorder prediction 280 311 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva05g01025 Bva-Chr5 5260780 5262706 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva05g01025 80 384 C3H Transcription Factor Family AT5G05810 50.789 3.13e-75 238
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva05g01025 K19041 - jre:109009455 337.421
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva05g01025 05 5260780 5262706 Bva05g01025 05 5260780 5262706 ECH