Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva05g01020 atggaagaagatgaagcatGCAACACGGGGCTTTGTCTGGGACTGGGAATGGGAGGTTTTGTGCCAAAGAAGAAGATTAAGAAAGAGGAGAAGCCTGTGCCATGCCTGGACCTTGACTTTGAGCTCTGTACAAACGAGGAAGCCATTAACGTGGATCATACGgcacaaagaaagagaaccaATCACGAAAGCCTCCAATACCCGAATGCAAAGAGTGATGCCACCAACAACAGGAACGGCTGCAGAAAGAAACTAAGGCTCACAAAAGAACAATCGGCTTTGCTGGAGGACAGCTTTAAACTCCATAGCACTCTCAACCCAGCACAGAAACAAGCACTTGCTGATCAGTTGAATCTGAAGCCTAGACAGATTGAAGTTTGGTTTCAGAACAGAAGAGCAAGGACGAAGCTGAAGCAAACAGAAGTAGACTGCGAGTTGTTGAAGAAATGCTGCCAAAATCTAACAGATGAGAACAGAAGGTTGAAGAGAGAATTACAAGAACTACgttcattaaaaattgaacaatCATCATCGCTATACATTCAACTGTCAAAAGCGGCGTCTCTGACTATGTGCTCCTCGTGTGAGAAACTGTTTACTCCAAATGAAGCAAAGAATATTAATAGTGCTGCCTCCGTTGGCGATGTGATCTG 653 0.4119 MEEDEACNTGLCLGLGMGGFVPKKKIKKEEKPVPCLDLDFELCTNEEAINVDHTAQRKRTNHESLQYPNAKSDATNNRNGCRKKLRLTKEQSALLEDSFKLHSTLNPAQKQALADQLNLKPRQIEVWFQNRRARTKLKQTEVDCELLKKCCQNLTDENRRLKRELQELRSLKIEQSSSLYIQLSKAASLTMCSSCEKLFTPNEAKNINSAASVGDVI 217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva05g01020 217 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT9 57 206 - -
Bva05g01020 217 Gene3D - 74 143 - -
Bva05g01020 217 CDD homeodomain 82 139 IPR001356 GO:0003677
Bva05g01020 217 ProSiteProfiles 'Homeobox' domain profile. 78 138 IPR001356 GO:0003677
Bva05g01020 217 MobiDBLite consensus disorder prediction 61 76 - -
Bva05g01020 217 ProSitePatterns 'Homeobox' domain signature. 113 136 IPR017970 GO:0000981|GO:0006355
Bva05g01020 217 Coils Coil 137 178 - -
Bva05g01020 217 Pfam Homeodomain 82 136 IPR001356 GO:0003677
Bva05g01020 217 SUPERFAMILY Homeodomain-like 66 139 IPR009057 -
Bva05g01020 217 MobiDBLite consensus disorder prediction 54 78 - -
Bva05g01020 217 Pfam Homeobox associated leucine zipper 138 171 IPR003106 GO:0006355|GO:0043565
Bva05g01020 217 PANTHER - 57 206 - -
Bva05g01020 217 SMART HOX_1 80 142 IPR001356 GO:0003677
Bva05g01020 217 SMART halz 138 183 IPR003106 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva05g01020 Bva-Chr5 5233858 5235209 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva05g01020 72 198 Homeobox Transcription Factor Family AT4G37790 71.318 1.86e-57 181
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Bva05g01020 Homeodomain 1.8e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva05g01020 K09338 - qsu:111997626 253.832
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva05g01020 05 5233858 5235209 Bva06g00624 06 6257490 6258901 BWGD