Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva05g01013 ATGGCAGTAGATCTGGTGGTGATACCTAGGATGGAAGAGCAGGTTGCGATACAGGAAGCTGCCTCGGCTGGGTTGAAGAGCATGGAGCATCTCATTCGTGTGCTTTCTTCTCAAGCCCCTCAGACCCATCCCCGTGACCACCAACTCAACCACCTTGACTGCAGAGAAATCACCGACTTCACCGTTTCTAAGTTCAAGCAAGTTATCAACTTATTGAATCGAACCGGGCACGCCCGTTTCCGCCGTGGACCCTCAAATCCTTCTTCCTCTGTTTCTGTTCCTTCCCAGTCTGCAAAATTCGACCCGCCCCAGATTCAATTCGGTCATAAACAGGTTCAATCACACTCTTCTCACCCGGGATTGGATTTAACTCTTGATTTTGCGAAGCCCAACCAGGTAAAATCGGATCCAAAAACGTCTACCGATTTATCTCAACACTCCAAGGACACCTTCAGTATATCCCCGCCCATGTCCACCACAACCTCATCGTTTATGTCATCCATAACTGGAGACGGCAGCGTTTCTGATGGTAAGATAGGTACATCGCTGCTCGCTGCTCCGGCACCCACTGTCTCCGCCGCTAAACCCCCTCTCTCGTCATCTCACCGGAAAAGGTGCCACGATGCTACCGTCTCTGGAAAAGCTTCATCCCCCGCTCATTGTCATTGCTCTAAGCGAAGGAAATCCCGAGTTAAGCGAACGATTCGAGTGCCGGCAATAAGCTCCAAGATCGCCGATATTCCATCGGACGAATATTCTTGGAGAAAGTACGGTCAGAAACCGATCAAGGGCTCGCCCTTCCCACGTGGGTATTACAAGTGTAGCACCGTGAGGGGGTGCCCCGCAAGGAAGCACGTGGAGCGAGCGCAAGACGATCCAAAGATGCTAATCGTGACATACGAGGGAGAGCACCGTCACACGCAAGGCCGTCCGGCAGAAACCAGCGCTGCCGGCAACGGTTTCGGTATTCAGGGAAGTTA 980 0.5224 MAVDLVVIPRMEEQVAIQEAASAGLKSMEHLIRVLSSQAPQTHPRDHQLNHLDCREITDFTVSKFKQVINLLNRTGHARFRRGPSNPSSSVSVPSQSAKFDPPQIQFGHKQVQSHSSHPGLDLTLDFAKPNQVKSDPKTSTDLSQHSKDTFSISPPMSTTTSSFMSSITGDGSVSDGKIGTSLLAAPAPTVSAAKPPLSSSHRKRCHDATVSGKASSPAHCHCSKRRKSRVKRTIRVPAISSKIADIPSDEYSWRKYGQKPIKGSPFPRGYYKCSTVRGCPARKHVERAQDDPKMLIVTYEGEHRHTQGRPAETSAAGNGFGIQGS 326
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva05g01013 326 SUPERFAMILY WRKY DNA-binding domain 246 307 IPR036576 GO:0003700|GO:0006355|GO:0043565
Bva05g01013 326 MobiDBLite consensus disorder prediction 191 228 - -
Bva05g01013 326 Pfam WRKY DNA -binding domain 250 306 IPR003657 GO:0003700|GO:0006355|GO:0043565
Bva05g01013 326 Gene3D WRKY domain 234 309 IPR036576 GO:0003700|GO:0006355|GO:0043565
Bva05g01013 326 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 7 310 IPR044810 GO:0003700
Bva05g01013 326 MobiDBLite consensus disorder prediction 78 165 - -
Bva05g01013 326 MobiDBLite consensus disorder prediction 133 165 - -
Bva05g01013 326 ProSiteProfiles WRKY domain profile. 243 309 IPR003657 GO:0003700|GO:0006355|GO:0043565
Bva05g01013 326 SMART WRKY_cls 248 308 IPR003657 GO:0003700|GO:0006355|GO:0043565
Bva05g01013 326 MobiDBLite consensus disorder prediction 82 120 - -
Bva05g01013 326 PANTHER TRANSCRIPTION FACTOR WRKY FAMILY-RELATED 7 310 - -
Bva05g01013 326 Pfam Plant zinc cluster domain 203 246 IPR018872 -
Bva05g01013 326 MobiDBLite consensus disorder prediction 303 326 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva05g01013 Bva-Chr5 5204239 5206057 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva05g01013 1 322 WRKY Transcription Factor Family AT2G24570 54.925 8.15e-102 300
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Bva05g01013 WRKY 2.2e-26 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva05g01013 - - gmx:732589 402.905
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva05g01013 05 5204239 5206057 Bva06g00631 06 6287692 6289610 BWGD
Bva05g01013 05 5204239 5206057 Bva05g01013 05 5204239 5206057 ECH