Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva05g01007 ATGAGTCACTACAAGGAACAGAATGATATAGAGGCCGGAAGTAGCGGTTCTGGTGTCTTCGACGACTGCCATTCGTCAGATCCGTTTAATATTACCAGGACCAAGAATGCTTCACTTGAACGTCTCAAGCGCTGGAGAcaAGCGGCGCTTGTGCTAAATGCTTCTCGTCGATTTCGTTACACCTTGGacttgaaaaaagaagaggataAAAGGCAAACATTAAGGAAGATTAGAGCGCATGCACAAGCAATTAGAgCTGCATATCTTTTCAAAGCCGCAGGGGCGCAAATAAATGGAATCCAAAAACCTCTGCCCACCTCCACGGGTGAATTTGCTATTGGACAAGAGCAGCTTGCTTCAATTTCAAGGGAACATAATATTACTGCTCTGCAGCAATACGGGGGGGTTAAAGGGCTATCAGATTTGTTGAAAACCAATTTAGAAAAAGGGATTTATGGGGATGATGCTGACTTAGTAAAACGGAGGAATGCATTTAGCTCAAACACTTATCCtcgaaagaaaggaaggagcTTTTTGATGTTTATGTGGGATGCTTGCAAGGATCTAACCTTGATTATATTAATGGTAGCTGCAGTGGCTTCATTGGCATTGGGGATAAAATCTGAGGGTATCAAGGAAGGCTGGTATGATGGAGGAAGCATTGCTTTTGCTGTTAttcttgttattgttgttaCAGCCGTAAGTGATTATAAACAGTCTCTTCAGTTTCAAAATCTAAAtgaggagaagagaaatatacaTTTGGAGGTTGTCAGAGGTGGTAGAAGATTGGAAATCTCAATATATGATATTGTTGTTGGTGATGTTATACCCCTTAATATTGGTAACCAGGTCCCTGCTGATGGAATTGTGATTAATGGTCACTCTCTTGCAATTGATGAATCAAGTATGACTGGGGAGAGCAAGACTGTCCATAAGGATTCTAAAGACCCCTTTCTGATGTCTGGATGTAAAGTGGCAGATGGCAGTGGTACTATGCTGgTAACCGGTGTTGGTATTCATACTGAATGGGGGCTCCTAATGGCTAGTATTTCTGAAGACACCGGTGAAGAAACACCCCTGCAGGTACGCTTAAATGGTGTTGCAACCTTCATTGGTATCGTTGGACTGACTGTAGCCGTTGCTGTCTTGGTTGTGTTACTGGCCAGATATTTCTCTGGGCATACTAAAAACACAGATGGAAGTGTTCAATTTGTAAAGGGCAAGACAAAAGTTGGCGATGCTATTGATGGAGCAATTAAGATAGTCACAGTTGCAGTCACCATTGTCGTGGTTGCAGTGCCTGAAGGGCTGCCCTTAGCTGTTACCCTAACGCTTGCCTACTCGATGAAAAAGATGATGGCAGATAAAGCTTTGGTGAGGAGGCTTTCTGCCTGTGAGACAATGGGCTCTGCCACAACCATTTGCAGTGATAAGACTGGAACTTTGACTATGAATAAGATGACTGTGGTTGAGGGTTACGTTGGTGGGAAGATGGATTCTCCTGACAACAAGTCAGCTATCTCTCCTTTGCTCAGTTCATTGCTCATCGAAGGTGTTGCACAGAACACTAATGGCAGTGTTTATGTACCTGAGGGCAGTAATGATGTGGAGGTTTCTGGATCACCAACAGAAAAGGCAATCTTATCCTGGGCAATCAAGCTGGGGATGAACTTCGAGGTTGTCAGATCAGAATCATCTATCATCCATGTCTTTCCATTCAATTCTGAGAAAAAACGAGGTGGAGTTGCAGTACAGACGCTTGACTCTCAGGTACATATACATTGGAAAGGTGCTGCAGAGATTGTCTTAGCCTGTTGTACAGGCTATATGGATGCAAATGACCAGTTTGTAGAGATGACTGATGAAAAgATGGCATTTTTTAAGAAAGCTATTGAAGATATGGCAGCTGATAGTTTACGTTGTGTTGCCATTGCATATAGATCATATGAAATGGAGAAAGTTCCGACTAGTGAAGAAGAACTCTCTGGCTGGTCATTGCCTGAGAATGATCTCATTTTACTGGCAATTGTTGGTCTGAAGGATCCTTGTCGATCTGGTGTCAAAGATGCAGTGCAACTTTGCCAAAATGCTGGAGTTAAGGTACGAATGGTCACTGGTGACAATGTGAAAACTGCTAAAGCAATTGCTATGGAATGTGGAATACTTACTTCGTTAGAGGATGCCACAGAGACCGATGTCATTGAAGGAAAAGCATTCCGTGCCTTGTCTGATACACAAAGAGAAGACATTGCTGAGAAGATATCGGTGATGGGACGGTCATCTCCTAATGACAAGCTTTTACTTGTGCAAGCATTGAGGAGGAGGGGACATGTGGTTGCTGTAACTGGGGATGGCACTAATGATGCTCCTGCACTACATGAGGCTGATATTGGTCTAGCAATGGGCATTCAAGGGACAGAAGTTGCTAAAGAGAGTTCTGATATCATCATTTTGGATGACAATTTTGCTTCTGTTGTGAAGGTTGTCAGATGGGGACGGTCTGTATATGCAAATATTCAGAAATTTATCCAGTTTCAGCTCACAGTAAACGTTGCAGCTCTTGTTATTAATGTTGTTGCTGCAGTTTCCTCTGGTGATGTCCCATTAAATACAGTACAGCTACTCTGGGTAAACCTTATTATGGATACTCTTGGAGCACTAGCCTTGGCAACTGAACCACCAACTGATCACCTGATGCATAGGCCCCCGGTAGGTCGAAGAGAACCTCTCATAACAAACATTATGTGGAGGAACCTGCTGATTCAGGCAATGTACCAAGTGTGTGTTTTGCTTGTACTCAATTTCCGAGGTAGGAGCATACTGGGTCTGAAGCGTGATAACAACGACCATgctgtcaaagtgaagaacaCTTTGGTATTTAATGCATTCGTTCTCTGTCAAATCTTCAACGAATTTAATGCTCGAAAGCCAGATGAATTCAACATATTCAAGGGCGTCACAAAGAACTACCTCTTTATTGGGATAGTGGGAATAACTGTCGTGCTTCAGATTAtcataattgaatttcttggGAAGTTTACTACAACAGTCAGGCTTAATTGGAAGCAGTGGATCATTAGCATCATCATTGGATTGATTAGTTGGCCTCTTGCTTTGGTTGGGAAGTTGATACCTGTACCAGAGACTTCCACTTTACTAATTGCAACTCCCCTGTG 3179 0.4143 MSHYKEQNDIEAGSSGSGVFDDCHSSDPFNITRTKNASLERLKRWRQAALVLNASRRFRYTLDLKKEEDKRQTLRKIRAHAQAIRAAYLFKAAGAQINGIQKPLPTSTGEFAIGQEQLASISREHNITALQQYGGVKGLSDLLKTNLEKGIYGDDADLVKRRNAFSSNTYPRKKGRSFLMFMWDACKDLTLIILMVAAVASLALGIKSEGIKEGWYDGGSIAFAVILVIVVTAVSDYKQSLQFQNLNEEKRNIHLEVVRGGRRLEISIYDIVVGDVIPLNIGNQVPADGIVINGHSLAIDESSMTGESKTVHKDSKDPFLMSGCKVADGSGTMLVTGVGIHTEWGLLMASISEDTGEETPLQVRLNGVATFIGIVGLTVAVAVLVVLLARYFSGHTKNTDGSVQFVKGKTKVGDAIDGAIKIVTVAVTIVVVAVPEGLPLAVTLTLAYSMKKMMADKALVRRLSACETMGSATTICSDKTGTLTMNKMTVVEGYVGGKMDSPDNKSAISPLLSSLLIEGVAQNTNGSVYVPEGSNDVEVSGSPTEKAILSWAIKLGMNFEVVRSESSIIHVFPFNSEKKRGGVAVQTLDSQVHIHWKGAAEIVLACCTGYMDANDQFVEMTDEKMAFFKKAIEDMAADSLRCVAIAYRSYEMEKVPTSEEELSGWSLPENDLILLAIVGLKDPCRSGVKDAVQLCQNAGVKVRMVTGDNVKTAKAIAMECGILTSLEDATETDVIEGKAFRALSDTQREDIAEKISVMGRSSPNDKLLLVQALRRRGHVVAVTGDGTNDAPALHEADIGLAMGIQGTEVAKESSDIIILDDNFASVVKVVRWGRSVYANIQKFIQFQLTVNVAALVINVVAAVSSGDVPLNTVQLLWVNLIMDTLGALALATEPPTDHLMHRPPVGRREPLITNIMWRNLLIQAMYQVCVLLVLNFRGRSILGLKRDNNDHAVKVKNTLVFNAFVLCQIFNEFNARKPDEFNIFKGVTKNYLFIGIVGITVVLQIIIIEFLGKFTTTVRLNWKQWIISIIIGLISWPLALVGKLIPVPETSTLLIATPL 1059
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva05g01007 1059 Pfam Ca2+-ATPase N terminal autoinhibitory domain 26 68 IPR024750 GO:0005516
Bva05g01007 1059 Pfam haloacid dehalogenase-like hydrolase 473 797 - -
Bva05g01007 1059 TIGRFAM ATPase-IIB_Ca: calcium-translocating P-type ATPase, PMCA-type 124 1047 IPR006408 GO:0005388|GO:0005524|GO:0016020|GO:0070588
Bva05g01007 1059 SUPERFAMILY Calcium ATPase, transmembrane domain M 133 1046 IPR023298 -
Bva05g01007 1059 CDD P-type_ATPase_Ca_PMCA-like 160 916 - -
Bva05g01007 1059 Gene3D - 37 92 - -
Bva05g01007 1059 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 750 863 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Bva05g01007 1059 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 417 508 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Bva05g01007 1059 Pfam Cation transporting ATPase, C-terminus 868 1045 IPR006068 -
Bva05g01007 1059 SMART Cation_ATPase_N_a_2 132 206 IPR004014 -
Bva05g01007 1059 Pfam Cation transporter/ATPase, N-terminus 134 201 IPR004014 -
Bva05g01007 1059 SFLD p-type atpase 458 835 IPR044492 -
Bva05g01007 1059 ProSitePatterns E1-E2 ATPases phosphorylation site. 478 484 IPR018303 -
Bva05g01007 1059 PRINTS Sodium/potassium-transporting ATPase signature 594 612 - -
Bva05g01007 1059 PRINTS Sodium/potassium-transporting ATPase signature 219 239 - -
Bva05g01007 1059 PRINTS Sodium/potassium-transporting ATPase signature 469 490 - -
Bva05g01007 1059 PRINTS Sodium/potassium-transporting ATPase signature 855 876 - -
Bva05g01007 1059 Gene3D - 473 828 IPR023214 -
Bva05g01007 1059 PANTHER CALCIUM-TRANSPORTING ATPASE 19 1050 - -
Bva05g01007 1059 Gene3D - 486 683 IPR023299 GO:0000166
Bva05g01007 1059 SUPERFAMILY HAD-like 474 888 IPR036412 -
Bva05g01007 1059 Pfam E1-E2 ATPase 254 454 - -
Bva05g01007 1059 Gene3D - 184 1036 - -
Bva05g01007 1059 Gene3D - 157 352 - -
Bva05g01007 1059 PANTHER CATION TRANSPORTING ATPASE 19 1050 - -
Bva05g01007 1059 SFLD Haloacid Dehalogenase 458 835 - -
Bva05g01007 1059 PRINTS P-type cation-transporting ATPase superfamily signature 300 314 - -
Bva05g01007 1059 PRINTS P-type cation-transporting ATPase superfamily signature 676 687 - -
Bva05g01007 1059 PRINTS P-type cation-transporting ATPase superfamily signature 783 802 - -
Bva05g01007 1059 PRINTS P-type cation-transporting ATPase superfamily signature 476 490 - -
Bva05g01007 1059 PRINTS P-type cation-transporting ATPase superfamily signature 807 819 - -
Bva05g01007 1059 PRINTS P-type cation-transporting ATPase superfamily signature 698 708 - -
Bva05g01007 1059 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 483 680 IPR023299 GO:0000166
Bva05g01007 1059 SUPERFAMILY Calcium ATPase, transduction domain A 254 349 IPR008250 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva05g01007 Bva-Chr5 5156495 5175502 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva05g01007 6 1050 Primary Pumps ATPases AT4G29900 74.905 0.0 1602
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva05g01007 K01537 - gmx:100792945 1717.59
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva05g01007 05 5156495 5175502 Bva06g00639 06 6319961 6335227 BWGD
Bva05g01007 05 5156495 5175502 Bva05g01007 05 5156495 5175502 ECH