Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva05g01005 ATGGTGCCACTCCTTTATCGACCGACGACCTGCCACCTCTGCGATTGCCCCTCTGAAGCCGCAATCCTTAAGATGAGTATAGAGGAAGTCAAGGGGGGAGCTTTGGTTCCTGAATCCGTGTTGAAGAAGCAGAAAAGGAGCGAGGAATGGGTTCTGGCAAAAAAGCAGGACGTTGGAGCTGCTAAGAAAGCAAGCtctgaaaaaaggaaattgatcTACAACAGAGCCAAATTGTATGCCAAGGAGTATGATGAAGAGCAAAAGGAGCTCATTAGATTGAAGCGTGAAGCCAAGCTTAAGGGTGGATTTTATGTTGACCCAGAAGTTAAGTTTCTGTTCATCATCAGGATCCGTGGCATCAATGCTATGAACCCACAAACAAGGAAGATTCTGCAGCTTCTTCGATTGAGACAGATTTTCAATGGCGTCTTTCTGAAGGTTAACAAAGCAACATTGAATATGCTCCACAGGGTAGAGCCTTATGTTACCTATGGATACCCTAACTTAAAGAGTGTTAGAGAACTGATCTACAAGAGAGGTTATGGGAAAGTTGACAAGCAGAGAATTGCTTTGACAGACAACTCAATTATTGATCAGGCTTTAGGCAAGCATGGGATCATTTGCATGGAAGACTTGATCCATGAGATTATGACTGTTGGACCCCACTTCAAGGAAGCAAACAACTTCCTATGGCCTTTCAAGCTCAAGGCACCACTTGGTGGTTtggataagaaaagaaatcattatGTTGAAGGAGGCGATGCTGGAAACCGGGAAGGTTATATCAATGAGCTCATTAGGAGGATGAATTA 812 0.4224 MVPLLYRPTTCHLCDCPSEAAILKMSIEEVKGGALVPESVLKKQKRSEEWVLAKKQDVGAAKKASSEKRKLIYNRAKLYAKEYDEEQKELIRLKREAKLKGGFYVDPEVKFLFIIRIRGINAMNPQTRKILQLLRLRQIFNGVFLKVNKATLNMLHRVEPYVTYGYPNLKSVRELIYKRGYGKVDKQRIALTDNSIIDQALGKHGIICMEDLIHEIMTVGPHFKEANNFLWPFKLKAPLGGLDKKRNHYVEGGDAGNREGYINELIRRMN 270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva05g01005 270 Pfam Ribosomal protein L30p/L7e 112 162 IPR016082 -
Bva05g01005 270 Gene3D - 216 270 IPR036919 -
Bva05g01005 270 Gene3D - 111 215 IPR036919 -
Bva05g01005 270 CDD Ribosomal_L7_archeal_euk 112 270 IPR035808 -
Bva05g01005 270 ProSitePatterns Ribosomal protein L30 signature. 130 162 IPR018038 -
Bva05g01005 270 PANTHER 60S RIBOSOMAL PROTEIN L7-RELATED 23 270 - -
Bva05g01005 270 Pfam Ribosomal L30 N-terminal domain 36 107 IPR012988 -
Bva05g01005 270 PANTHER 60S RIBOSOMAL PROTEIN L7 23 270 IPR039699 -
Bva05g01005 270 TIGRFAM uL30_euk: 60S ribosomal protein uL30 37 270 IPR005998 GO:0000463|GO:0003735|GO:0022625
Bva05g01005 270 SUPERFAMILY Ribosomal protein L30p/L7e 112 270 IPR036919 -
Bva05g01005 270 Coils Coil 76 100 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva05g01005 Bva-Chr5 5146264 5148797 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva05g01005 27 270 Cytoplasmic Ribosomal Protein Gene Family AT3G13580 80.328 1.46e-149 416
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva05g01005 K02937 - jre:109006184 431.024
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva05g01005 05 5146264 5148797 Bva05g01005 05 5146264 5148797 ECH