Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva05g01000 ATGGAAGACATTGGTGAGGAGTACAAGCATTACTGGGAGACCAATATGTATTTTCAAAGAGAAGAGCTTAACAGTAGTTGGGGATTGGAAGAGGCTTTCTCCGGCGGCTACTACGATTCCAGCTCGCCGGATGGGGCGGCAACATCCGGGGCTTCTAAGAACATTGTCTCCGAGAGGAACAGGAGGAAGAAGCTGAACGAGAGGCTCTTCGCACTCAGAGCCGTGGTCCCCAACATTAGCAAGATGGATAAGGCTTCTATAATAAAAGATTCAATTGAATACATCCAACACTTGCACGAGCAAGAGAAGAGCATTCAAGCGGAGATAATGGAACTTGAATCTGGGAAGCTGAATAAGAATCCAAGGTATGAATTTGAGCAGGAGCTCCCCGTCTTGCTGAGgtctaagaaaaagaaaacagaacagCAGCAGCTATATGATTCTGTCAGCTCGAGAAATTCACCTATTGAAGTCCTCgagCTCAGGGTAACTTACATGGGAGAGAAAACCGTTGTGGTGAGCTTGACGTGCAGTAAAAGGACTGACACTATGGTGAAGCTATGCGAAGTGTTCGAATCTTTGAAGTTAAAGATCATCACTGCCAACATAACTACTTTCTCGGGCAGGCTTTTGAAGACCGTCTTCGTTGAGGCAGAAGAAGACGAGAAAGAtcttttgcaaataaaaattcagaCAGCGATTGCAGCTCTTAATGATCCTCAAAGCCCTATGAGCATCTG 740 0.4324 MEDIGEEYKHYWETNMYFQREELNSWGLEEAFSGGYYDSSSPDGAATSGASKNIVSERNRRKKLNERLFALRAVVPNISKMDKASIIKDSIEYIQHLHEQEKSIQAEIMELESGKLNKNPRYEFEQELPVLLRSKKKKTEQQQLYDSVSSRNSPIEVLELRVTYMGEKTVVVSLTCSKRTDTMVKLCEVFESLKLKIITANITTFSGRLLKTVFVEAEEDEKDLLQIKIQTAIAALNDPQSPMSI 245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva05g01000 245 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 48 97 IPR011598 GO:0046983
Bva05g01000 245 Pfam Helix-loop-helix DNA-binding domain 55 98 IPR011598 GO:0046983
Bva05g01000 245 SMART finulus 54 103 IPR011598 GO:0046983
Bva05g01000 245 Coils Coil 215 235 - -
Bva05g01000 245 PANTHER TRANSCRIPTION FACTOR BHLH35 1 239 - -
Bva05g01000 245 Gene3D - 46 114 IPR036638 GO:0046983
Bva05g01000 245 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 1 239 - -
Bva05g01000 245 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 52 112 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva05g01000 Bva-Chr5 5095849 5099675 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva05g01000 1 216 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G57150 63.636 1.59e-84 249
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Bva05g01000 HLH 3.5e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva05g01000 - - gmx:100817978 397.512
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva05g01000 05 5095849 5099675 Bva06g00650 06 6407575 6411598 BWGD
Bva05g01000 05 5095849 5099675 Bva05g01000 05 5095849 5099675 ECH