Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva05g00993 ATGGGATGCTCCAAAATGTTGTCATGTCATGTATCTCTGGGATTGAAGCTAGCTAGCCCATCAGATATGGATGTTAAGGTGGatttttctccaaattgtTGGGAGAAGGTGGAAAAGGAACTTCAGAGATTAGCCACCGTGgtaaaaattgattatggggaggttaaaattcaaaaacaaaagaagaaaaggagaaagaagaaaaggcaaaGGGATAACACAGAGCTTGATGAAGCTTTACGCCTGCAGAGAAGAACAAGGtacctattaattaaaatgaaactgGAGCAGAACCTTATTGATGCTTACTCAGGGGAAGGTTGGAAAGGTCAGAGTCGAGAAAAGATTAGGCCAGAAAGGAACTATAGAGAGCACAGAAGCAggattttaaagtgtaaacTTAGTATTCGTGATGCCATTCGCCAGTTGGATTCTCTTAGTTCAGTAGGTAGCATTGAAGATTCTGTCATCGCCCCAGATGGGTCTGTTTACCATGAACATATATTCTGTGCAAAGCGCAAGTTGCCTGAAGCTTTCCCAGATAATGACATCATACTCTGTGATATCACATGCAACCGTGCTTTTCACCAAAAATGTCTTGATCCTCCTATGGACACCAAAAATATTCCTCCTGAAGATGAGGGAAGGTTTTGCAAGTTTTGTGAATGTAAGATGAACATACTGGACGTAGTGAATGCGCATCTTGGGACTCGCTTCTCCATGGACAGTAACTGGCTGGATGTATTTAAGGAAGAAGCTGCTTTCCCTGATGGTGATACAGCATTACTAAATCCAGAAGAAGAATGGCCATCAGATGACTCTGAAGATGATGACTATAATCCAGAGAAGAGAGACGACAACCATAGCACCAGCACAGAAGATACTGATGATGATGCTGCGTCTGATGATTTAAGCAATTCTCCTTGTTCGTGGTCTCTAGAGGGTGAATATTCTGCAGGAAAGGAAGGCACTGGCCATGAATCTGTCAATAGCTGCATAGATTCTGACGAATCTGGTGAAATAGCATGTGGCCGTAAAGCAGTTGACTACAAGAAACTTTATGATGAAATGTTTGGGAAGGATGCTCCTGCTTGTGAACAAGTTAGTGAAGATGAAGACTGGGGTCCTGGAAGAAGAAGGCGTAGAGAAAAGGAGTCTGATGCTGTTAATACTCTTATGACTCTACATGAAAGTGAGAATAAGCATCCCAATACTGAAAGCGAAGACATGATGAAGGAAGTTCCTTCGGGCATGCAAATTAAAAGGCCTTGTTTCAGGATTCCACATGATGCAGTTCAGAAACTTCGCCAAGCCTTTGCAGAGAACGAACTTCCTCCAAGATCTGTAAAGGAGGGTCTTTCGAAGGAGTTGGGACTTGATCCCGAGAAGGTTAGCAAATGGTTCAAAAATGCACGTTACTTAgcacttaaaaaaagaaagGACTTAATGGAGTTCGGTGATGACGTGAGCTTGAAGAAACTCTTGAAAGCCAGAAAGAGGAAGGTAAAGTTTATGTTTGAGGGAGACTCTCAGGCAGCAGAGTTGGAATTTCAAGACTTAGCGAAGTG 1568 0.3954 MGCSKMLSCHVSLGLKLASPSDMDVKVDFSPNCWEKVEKELQRLATVVKIDYGEVKIQKQKKKRRKKKRQRDNTELDEALRLQRRTRYLLIKMKLEQNLIDAYSGEGWKGQSREKIRPERNYREHRSRILKCKLSIRDAIRQLDSLSSVGSIEDSVIAPDGSVYHEHIFCAKRKLPEAFPDNDIILCDITCNRAFHQKCLDPPMDTKNIPPEDEGRFCKFCECKMNILDVVNAHLGTRFSMDSNWLDVFKEEAAFPDGDTALLNPEEEWPSDDSEDDDYNPEKRDDNHSTSTEDTDDDAASDDLSNSPCSWSLEGEYSAGKEGTGHESVNSCIDSDESGEIACGRKAVDYKKLYDEMFGKDAPACEQVSEDEDWGPGRRRRREKESDAVNTLMTLHESENKHPNTESEDMMKEVPSGMQIKRPCFRIPHDAVQKLRQAFAENELPPRSVKEGLSKELGLDPEKVSKWFKNARYLALKKRKDLMEFGDDVSLKKLLKARKRKVKFMFEGDSQAAELEFQDLAK 522
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva05g00993 522 Coils Coil 57 77 - -
Bva05g00993 522 SMART PHD_3 169 222 IPR001965 -
Bva05g00993 522 Gene3D - 420 484 - -
Bva05g00993 522 Pfam Homeodomain 429 473 IPR001356 GO:0003677
Bva05g00993 522 SMART HOX_1 420 482 IPR001356 GO:0003677
Bva05g00993 522 ProSiteProfiles 'Homeobox' domain profile. 418 478 IPR001356 GO:0003677
Bva05g00993 522 CDD PHD_PRHA_like 169 221 IPR045876 -
Bva05g00993 522 MobiDBLite consensus disorder prediction 365 390 - -
Bva05g00993 522 MobiDBLite consensus disorder prediction 266 280 - -
Bva05g00993 522 MobiDBLite consensus disorder prediction 365 413 - -
Bva05g00993 522 Pfam PHD-finger 170 224 IPR019787 -
Bva05g00993 522 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 154 232 IPR013083 -
Bva05g00993 522 MobiDBLite consensus disorder prediction 281 295 - -
Bva05g00993 522 MobiDBLite consensus disorder prediction 259 336 - -
Bva05g00993 522 SUPERFAMILY Homeodomain-like 421 483 IPR009057 -
Bva05g00993 522 ProSiteProfiles Zinc finger PHD-type profile. 167 224 IPR019787 -
Bva05g00993 522 CDD homeodomain 421 480 IPR001356 GO:0003677
Bva05g00993 522 PANTHER BNAA01G07010D PROTEIN 56 480 - -
Bva05g00993 522 SUPERFAMILY FYVE/PHD zinc finger 163 227 IPR011011 -
Bva05g00993 522 PANTHER POLYCOMB-LIKE TRANSCRIPTION FACTOR 56 480 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva05g00993 Bva-Chr5 5071703 5075796 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva05g00993 69 480 Homeobox Transcription Factor Family AT4G29940 56.075 3.40e-145 434
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-PHD Bva05g00993 Homeodomain 2.8e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva05g00993 - - gmx:100816912 644.81
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva05g00993 05 5071703 5075796 Bva06g00657 06 6443033 6449430 BWGD
Bva05g00993 05 5071703 5075796 Bva05g00993 05 5071703 5075796 ECH