Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva05g00961 ATGGAGTGGGACAGCGACTCTGATCTGAGCGGGGACGAGGACGAAATCTTTCCGCACAACGATGATGGTCCTCTTCCCTTTCCTGTTGAGAATTTGCTTCAAACGGCTCCATGTGGGTTCGTCGTCACTGATGCACTGGAGCCGGACCATCCAATTATATATGTCAACACTGTCTTCGAGATGCTCACTGGGTATCGGGCAGAAGAAGTGATTGGTCGTAATTGCCGTTTCTTGCAATGCCGAGGACCGTTTGCTAAGAGAAGGCATCCATTTGTGGACTCATCTGTAGTTTCAGAAATTAGGAGATGCCTCGAGGAGGGTATAGAATTCCAAGGTGAGTTGCTGAACTTTAGGAAAGATGGATCTCCACTGATGAACAGATTGCGGCTGACACCTATATATGGAGATGATCAGACTATAACACATGTCATTGGAATCCAGTTCTTCACAGAGGCAAACATTGATCTTGGTCCTGTATTTGGTTCAACAATTAAGGAATCAACTAAATCATCTGATCGCTTTCATTCTATTCTTTCCTCATTGCGCTCACTTCCAGTTGGGGACCGGAATGTATCTCGTGGAGTTTGTGGCTTATTGCAATTGAGTGATGAGGTAATATCTTTCAAAATACTTGCGCGCTTAACTCCTAGAGATATTGCATCAATTGGCTCTGTCTGTAGACAATTGTACGAGCTGACAAAAAATGAAGACCTTTGGAGGATGGTGTGCCAAAATGCATGGGGCTGTGAGACTACACGAGTTTTAGAGACTGTGCCTGGTGCCAGGAGACTTGGATGGGTTCGGCTGGCTAGGGAATTGACCACTCTTGAAGCAGCCGCATGGAGGAAGCTGACTGTTGGAGGGGTTAACATGCAACCTATGAACGATACCTTTGTGTTGGATCTCAATTCTAGTAATCCTGAGTGGCAACACGTCCAGGGCTTGCTCAATGATGTCTTTGTGCTGGATCTGGATGCGAAGCCTCCGACTTGGCGAGAAATTTCTGGATTGGCACCTCCCCTCCCTAGATCATGGCACAGCTCCTGTACTCTTGATGGTACTAAGCTGATAGTTTCTGGTGGCTGTGCTGATTCTGGAGTACTCTTGAGTGACACTTTCCTCCTCGATCTGTCAATGGAGAAACCTATCTGGAGAGAGATACCAGTGACATGGACTCCGCCATCTCGTCTGGGCCACACACTATCTGTTTACGGTGGTAGAAAAATACTGATGTTTGGGGGTCTTGCCAAGAGTGGACCCCTGCGATTTCGTTCTAGTGATGTATTCACAATGGATTTAAGTGAGGAGGAACCGTGTTGGAGATGCGTAACAGGAAGTGGAATGCCTGGTGCTGGGAATCCTGGGGGCGTAGCTCCTCCTCCTAGACTCGATCATGTGGCCGTTAGTCTTCCAGGTGGGAGAATCCTGATCTTTGGTGGGTCTGTTGCAGGTCTTCACTCAGCCTCCCAGCTTTACATTTTGGATCCTACAGAGGAAAAGCCTACGTGGAGAATTCTAAATGTACCTGGGCGGCCCCCGAGATTTGCTTGGGGACATAGTACATGTGTTGTCGGAGGTACAAGAGCCATAGTACTAGGTGGCCAAACAGGAGAGGAATGGATGCTAAGTGAGCTCCACGAGCTATCTCTGGCAAGTTCTGTGATCTA 1667 0.4787 MEWDSDSDLSGDEDEIFPHNDDGPLPFPVENLLQTAPCGFVVTDALEPDHPIIYVNTVFEMLTGYRAEEVIGRNCRFLQCRGPFAKRRHPFVDSSVVSEIRRCLEEGIEFQGELLNFRKDGSPLMNRLRLTPIYGDDQTITHVIGIQFFTEANIDLGPVFGSTIKESTKSSDRFHSILSSLRSLPVGDRNVSRGVCGLLQLSDEVISFKILARLTPRDIASIGSVCRQLYELTKNEDLWRMVCQNAWGCETTRVLETVPGARRLGWVRLARELTTLEAAAWRKLTVGGVNMQPMNDTFVLDLNSSNPEWQHVQGLLNDVFVLDLDAKPPTWREISGLAPPLPRSWHSSCTLDGTKLIVSGGCADSGVLLSDTFLLDLSMEKPIWREIPVTWTPPSRLGHTLSVYGGRKILMFGGLAKSGPLRFRSSDVFTMDLSEEEPCWRCVTGSGMPGAGNPGGVAPPPRLDHVAVSLPGGRILIFGGSVAGLHSASQLYILDPTEEKPTWRILNVPGRPPRFAWGHSTCVVGGTRAIVLGGQTGEEWMLSELHELSLASSVI 555
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva05g00961 555 CDD PAS 36 146 IPR000014 -
Bva05g00961 555 PANTHER ADAGIO PROTEIN 1-LIKE 313 554 - -
Bva05g00961 555 PANTHER ADAGIO PROTEIN 1-LIKE 1 288 - -
Bva05g00961 555 PANTHER ADAGIO PROTEIN 1-LIKE 288 313 - -
Bva05g00961 555 PANTHER BACTERIOOPSIN TRANSCRIPTIONAL ACTIVATOR 313 554 - -
Bva05g00961 555 PANTHER BACTERIOOPSIN TRANSCRIPTIONAL ACTIVATOR 1 288 - -
Bva05g00961 555 SUPERFAMILY Kelch motif 285 549 IPR015915 GO:0005515
Bva05g00961 555 Pfam PAS domain 37 147 IPR000014 -
Bva05g00961 555 PANTHER BACTERIOOPSIN TRANSCRIPTIONAL ACTIVATOR 288 313 - -
Bva05g00961 555 SUPERFAMILY PYP-like sensor domain (PAS domain) 36 147 IPR035965 -
Bva05g00961 555 Pfam Galactose oxidase, central domain 315 350 - -
Bva05g00961 555 SUPERFAMILY F-box domain 189 260 IPR036047 GO:0005515
Bva05g00961 555 TIGRFAM sensory_box: PAS domain S-box protein 32 146 IPR000014 -
Bva05g00961 555 Gene3D PAS domain 22 158 - -
Bva05g00961 555 MobiDBLite consensus disorder prediction 1 21 - -
Bva05g00961 555 Pfam Kelch motif 463 510 IPR011498 GO:0005515
Bva05g00961 555 Pfam Kelch motif 396 447 IPR011498 GO:0005515
Bva05g00961 555 ProSiteProfiles PAS repeat profile. 29 107 IPR000014 -
Bva05g00961 555 Pfam F-box-like 206 244 IPR001810 GO:0005515
Bva05g00961 555 Gene3D - 308 554 IPR015915 GO:0005515
Bva05g00961 555 Gene3D - 196 294 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva05g00961 Bva-Chr5 4866198 4871662 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva05g00961 33 148 AGC Kinase Gene Family AT5G58140 33.621 1.21e-14 75.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva05g00961 K12115 - tcc:18589282 999.193
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva05g00961 05 4866198 4871662 Bva05g00961 05 4866198 4871662 ECH