Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva05g00955 ATGAAGTATATTCGAACCAACAGCTTGAAGAGGCTTTTCTCCTTGAGACGACGCAGTTTCGGTGAAGaagttttgagtttgaatGGTTCTCCTGGCAAAGAAAACGAAGAGAAGTTGGAGGTTCTTCCTCTTGCAGAATGGCGAAGGCCCACTTGGAAATGCTTCTCTTTTCAAGAACTATTTGATGCCACCAATGGCTTCAGCCCAGAGAATCTGGTTGGAAAAGGAGGGTACGCAGAGGTATACAAGGGAAAATTGAAAGATGGAGAAGAATTTGCAGTGAAAAGGCTCACAAGAACTTCCtgtgatgaaagaaaagagaaggagtTTTTGACAGAGATCGGAACTATTGGTCATGTTCGCCATTCAAATGTATTACCCCTTTTGGGTTGTTGTATTGACAATGGGCTTTACCTTGTCTTTGAGCTATCATCCAGAGGCTCTGTTGCGTCTCTTCTTCATGATGAGACTTTGCCTCCAATGGAATGGGAAACAAGGCATAAGATAGCTCTTGGCACTGCTCATGGCCTCCATTACTTGCACAAGGGCTGCCAGAGAAGGATAATTCACAGGGACATCAAGGCCTCAAACATTCTTTTAACTGCAGATTTTGAACCACAGATATCTGATTTCGGACTAGCCAAATGGCTTCCTTCACAATGGACTCACCATTCAATTGCCCCAATTGAAGGGACATTTGGGCATTTGGCCCCTGAATACTATATGCATGGAATTGTGGATGAGAAAACAGATGTTTTTGCCTTTGGTGTGTTCTTACTTGAACTCATATCTGGGAGAAAACCTGTGGATGGCTCTTACCAAAGTTTGCATAACTGGGCTAAACCACTATTGAATCAAGGGGAAATAGAAAAACTGGTAGATCCAAGGCTAGAGGAGGCCTATGATGCAACACAGTTAAAAAGACTTGCCTTTGCAGCCTCTCTTTGCATCAGGGCAACTTCAATATGGCGACCCGCCATGAATGAGGTATTAGAGGTAATGGAGGAGGAAAAGATAGACAACGAGAAGTGGAAAATgccagaggaagaagaagatgagttCTGGGGTTTTGAGGATTTGGAATATGAATGTGACAGCACCTTCTCAATGTCACTACCAGACTCAATTGGAAGTACTTCTAATTA 1145 0.4096 MKYIRTNSLKRLFSLRRRSFGEEVLSLNGSPGKENEEKLEVLPLAEWRRPTWKCFSFQELFDATNGFSPENLVGKGGYAEVYKGKLKDGEEFAVKRLTRTSCDERKEKEFLTEIGTIGHVRHSNVLPLLGCCIDNGLYLVFELSSRGSVASLLHDETLPPMEWETRHKIALGTAHGLHYLHKGCQRRIIHRDIKASNILLTADFEPQISDFGLAKWLPSQWTHHSIAPIEGTFGHLAPEYYMHGIVDEKTDVFAFGVFLLELISGRKPVDGSYQSLHNWAKPLLNQGEIEKLVDPRLEEAYDATQLKRLAFAASLCIRATSIWRPAMNEVLEVMEEEKIDNEKWKMPEEEEDEFWGFEDLEYECDSTFSMSLPDSIGSTSN 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva05g00955 381 ProSitePatterns Protein kinases ATP-binding region signature. 73 95 IPR017441 GO:0005524
Bva05g00955 381 SMART serkin_6 67 312 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bva05g00955 381 ProSiteProfiles Protein kinase domain profile. 67 339 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bva05g00955 381 Gene3D Phosphorylase Kinase; domain 1 41 143 - -
Bva05g00955 381 SUPERFAMILY Protein kinase-like (PK-like) 48 334 IPR011009 -
Bva05g00955 381 Gene3D Transferase(Phosphotransferase) domain 1 145 357 - -
Bva05g00955 381 ProSitePatterns Serine/Threonine protein kinases active-site signature. 188 200 IPR008271 GO:0004672|GO:0006468
Bva05g00955 381 PANTHER OS04G0654600 PROTEIN 16 360 - -
Bva05g00955 381 Pfam Protein kinase domain 70 276 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bva05g00955 381 PANTHER OS08G0249100 PROTEIN 16 360 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva05g00955 Bva-Chr5 4828229 4831890 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva05g00955 55 337 Trihelix Transcription Factor Family AT1G70460 44.710 2.68e-72 237
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Bva05g00955 Pkinase 1.4e-39 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva05g00955 - - gmx:100305398 601.668
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva05g00955 05 4828229 4831890 Bva06g00698 06 6720555 6723782 BWGD
Bva05g00955 05 4828229 4831890 Bva05g00955 05 4828229 4831890 ECH