Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva05g00951 ATGGATTCTTGTTCCTCTTCACACTCCGACTCCCAACACCAAAACCACAATTGgctcactttctctctctcgcCTCAATCTTCCTCCGACTCTCCGCTCTCCCTTTTCAACtccttctcctcttcttccCCTGCAGCTCCCCTCACTCTAACAGgcAGCAACATCGATACGTCGGCGACGGCAACGGACGCTTCCGTTGGAGGTGCAACCAACCTGTCCATTTTCACGGCTGGTCCCAAGTTTGAGGACTTCCTTGGCGGTTCATCCGCCTTCACAGCTGCAAGTACTGCACCGCCACCGCTTCCGCACTTCTCCACCGACAACGAGATATACGATTCTGAGCTCAAGACGATAGCCGCCAGCTTCCTTCGCGGCCTCACTTCCCCCGAACAGGCTGAGCCCCAGAAACAGCATCCTCTAGCTCCAGCCGAGCCTTCCACCAAGAAATCTGTAGACACCTTCGGCCAGCGCACCTCCATCTATCGCGGCGTCACACGGCATAGATGGACGGGGAGATATGAAGCTCATCTCTGGGATAACAGCTGTAGAAGGGAGGGGCAAAGTCGGAAAGGAAGGCAAGTTTACTTGGGTGGCTACgataaggaagagaaagcaGCTAGAGCTTATGATCTCGCTGCTCTCAAGTACTGGGGTCCGACCACCACTACCAACTTTCCTaTTTCGAACTACGAGAAGGAGCTGGAAGAGATGAAGAACATGACGAGGCAGGAATTTGTTGCTTCTCTTCGAAGGAAGAGTAGTGGTTTCTCTAGGGGTGCCTCAATCTACAGAGGAGTGACGAGGCACCACCAGCATGGTCGATGGCAGGCAAGAATTGGCAGAGTTGCCGGCAACAAAGACCTCTACCTTGGCACTTTTAgcacCCAAGAAGAAGCTGCAGAGGCTTATGACGTTGCAGCGATCAAATTCAGAGGGCTAAATGCAGTAACCAACTTTGACATGAGCCGCTACGACGTGAAGAGCATTGCAAATAGTAACCTTCCGATAGGGGGATTATCAAGCAAAGCCAAGAATTCTACTGATTCTCTTTCAGAGACCAAAACCCATGAGACAAGTCGATCTGATGACAAAGATCTATCTTCAGCTTCATCGTCAGTACCCTTTGCATTGCATTCACAGCCATCGAGTTCAACTCTCAGCTTTGCCATTCCCATCAAGCAAGACCCTTCAGATTACTGGTCCATTCTTGGTTACCAAAACCCTTCCCTCAACGGCGACAAGAGCTCGTTTCAATCTTCCACTAATGGGTCTGCATTGCAAAGCTCTAATGCCACACCCTTCAACATGGACTTCTCTGCTGCTGCTTCAAATAGCACTTCTGGCAGTGAAAGCAACAACAATAACGCGTTTTTCAATGGGGGAATCTTAATGCAGCAGCAGCAAAACGCAAGTGGTGCAGCTTCAACTTCAATCCCATTTGCCACACCCATTACCTTAAACGGCAATTTTAGTTACGAGAGCTCTTTTGGATATGGAAATTGGGTTGGACCTACCCTACACACATTCCAAACCCATGCAAAACCCAGTCTCTTTCAGACACCAATCTTTGGGATGGAATA 1580 0.4778 MDSCSSSHSDSQHQNHNWLTFSLSPQSSSDSPLSLFNSFSSSSPAAPLTLTGSNIDTSATATDASVGGATNLSIFTAGPKFEDFLGGSSAFTAASTAPPPLPHFSTDNEIYDSELKTIAASFLRGLTSPEQAEPQKQHPLAPAEPSTKKSVDTFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQSRKGRQVYLGGYDKEEKAARAYDLAALKYWGPTTTTNFPISNYEKELEEMKNMTRQEFVASLRRKSSGFSRGASIYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDVAAIKFRGLNAVTNFDMSRYDVKSIANSNLPIGGLSSKAKNSTDSLSETKTHETSRSDDKDLSSASSSVPFALHSQPSSSTLSFAIPIKQDPSDYWSILGYQNPSLNGDKSSFQSSTNGSALQSSNATPFNMDFSAAASNSTSGSESNNNNAFFNGGILMQQQQNASGAASTSIPFATPITLNGNFSYESSFGYGNWVGPTLHTFQTHAKPSLFQTPIFGME 526
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva05g00951 526 Gene3D AP2/ERF domain 160 228 IPR036955 GO:0003700|GO:0006355
Bva05g00951 526 Gene3D AP2/ERF domain 262 322 IPR036955 GO:0003700|GO:0006355
Bva05g00951 526 Pfam AP2 domain 160 218 IPR001471 GO:0003700|GO:0006355
Bva05g00951 526 Pfam AP2 domain 262 312 IPR001471 GO:0003700|GO:0006355
Bva05g00951 526 SMART rav1_2 160 232 IPR001471 GO:0003700|GO:0006355
Bva05g00951 526 SMART rav1_2 262 326 IPR001471 GO:0003700|GO:0006355
Bva05g00951 526 ProSiteProfiles AP2/ERF domain profile. 262 320 IPR001471 GO:0003700|GO:0006355
Bva05g00951 526 ProSiteProfiles AP2/ERF domain profile. 160 226 IPR001471 GO:0003700|GO:0006355
Bva05g00951 526 MobiDBLite consensus disorder prediction 365 381 - -
Bva05g00951 526 CDD AP2 159 228 IPR001471 GO:0003700|GO:0006355
Bva05g00951 526 PRINTS Ethylene responsive element binding protein signature 161 172 IPR001471 GO:0003700|GO:0006355
Bva05g00951 526 PRINTS Ethylene responsive element binding protein signature 302 322 IPR001471 GO:0003700|GO:0006355
Bva05g00951 526 CDD AP2 261 322 IPR001471 GO:0003700|GO:0006355
Bva05g00951 526 MobiDBLite consensus disorder prediction 337 381 - -
Bva05g00951 526 SUPERFAMILY DNA-binding domain 159 228 IPR016177 GO:0003677
Bva05g00951 526 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 136 467 - -
Bva05g00951 526 MobiDBLite consensus disorder prediction 129 152 - -
Bva05g00951 526 MobiDBLite consensus disorder prediction 349 364 - -
Bva05g00951 526 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR BBM 136 467 - -
Bva05g00951 526 SUPERFAMILY DNA-binding domain 261 322 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva05g00951 Bva-Chr5 4799589 4802904 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva05g00951 99 526 AP2-EREBP Transcription Factor Family AT5G57390 59.326 1.58e-154 446
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Bva05g00951 AP2 4e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva05g00951 K09285 - gmx:100803558 664.07
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva05g00951 05 4799589 4802904 Bva05g00951 05 4799589 4802904 ECH